4.0:Information of module
Whole root - low pH 24H
In comparison with hira-root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 4.017e-15
GO:0050896 response to stimulus BP 6.241e-15
GO:0043207 response to external biotic stimulus BP 1.685e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 1.489e-12
GO:0090627 plant epidermal cell differentiation BP 2.492e-12
GO:0010054 trichoblast differentiation BP 2.880e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 24H		 Log2 signal ratio
hira-root
1 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 1.162 0.064
2 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.873 0.164
3 249476_at AT5G38910 [RmlC-like cupins superfamily protein] 0.846 -0.069
4 249893_at AT5G22555 unknown 0.832 -0.291
5 255075_at AT4G09110 [RING/U-box superfamily protein] 0.741 0.078
6 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.733 -0.260
7 258203_at AT3G13950 unknown 0.639 -0.015
8 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.603 -0.253
9 265151_at AT1G51340 [MATE efflux family protein] 0.554 -0.293
10 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.495 -0.556
11 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 0.479 -0.259
12 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.471 -0.259
13 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.468 -0.141
14 245076_at AT2G23170 GH3.3 0.429 -0.847
15 257947_at AT3G21720 ICL, isocitrate lyase 0.420 -0.511
16 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.410 0.583
17 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.393 -0.110
18 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.389 -0.249
19 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.382 -0.454
20 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.369 -0.506
21 255252_at AT4G04990 unknown 0.364 0.134
22 257206_at AT3G16530 [Legume lectin family protein] 0.353 -0.303
23 259743_at AT1G71140 [MATE efflux family protein] 0.335 -0.480
24 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.330 -0.457
25 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.315 -0.647
26 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 0.309 -0.084
27 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.306 -0.310
28 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.300 -0.362
29 245932_at AT5G09290 [Inositol monophosphatase family protein] 0.295 -0.231
30 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.290 -0.592
31 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.279 0.050
32 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.276 0.090
33 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.273 -0.032
34 249058_at AT5G44510 TAO1, target of AVRB operation1 0.269 -0.156
35 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.251 -0.028
36 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.251 -0.693
37 256525_at AT1G66180 [Eukaryotic aspartyl protease family protein] 0.250 -0.200
38 264938_at AT1G60610 [SBP (S-ribonuclease binding protein) family protein] 0.249 -0.193
39 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 0.243 -0.295
40 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D 0.238 -0.277
41 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 0.237 -0.180
42 246426_at AT5G17430 BBM, BABY BOOM 0.231 -0.227
43 252047_at AT3G52490 SMXL3, SMAX1-like 3 0.226 0.162
44 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 0.225 -0.170
45 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 0.225 -0.376
46 254347_at AT4G22070 ATWRKY31, WRKY31, WRKY DNA-binding protein 31 0.222 0.191
47 254034_at AT4G25960 ABCB2, ATP-binding cassette B2, PGP2, P-glycoprotein 2 0.220 -0.491
48 259261_at AT3G11390 [Cysteine/Histidine-rich C1 domain family protein] 0.215 -0.159
49 250572_at AT5G08210 MIR834A, microRNA834A 0.213 -0.335
50 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.210 -0.196
51 251535_at AT3G58540 unknown 0.207 0.113
52 261545_at AT1G63530 unknown 0.207 -0.074
53 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.199 -0.406
54 251315_at AT3G61410 unknown 0.198 0.098
55 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.196 0.023
56 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor 0.195 -0.206
57 255521_at AT4G02280 ATSUS3, SUS3, sucrose synthase 3 0.192 -0.411
58 251053_at AT5G01490 ATCAX4, CAX4, cation exchanger 4 0.188 -0.313
59 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 0.186 -0.167
60 263520_at AT2G42640 [Mitogen activated protein kinase kinase kinase-related] 0.186 -0.171
61 267028_at AT2G38470 ATWRKY33, WRKY DNA-BINDING PROTEIN 33, WRKY33, WRKY DNA-binding protein 33 0.186 -0.216
62 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.950 0.359
63 267045_at AT2G34180 ATWL2, WPL4-LIKE 2, CIPK13, CBL-interacting protein kinase 13, SnRK3.7, SNF1-RELATED PROTEIN KINASE 3.7, WL2, WPL4-LIKE 2 -0.777 0.104
64 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 -0.736 0.524
65 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.688 0.249
66 257720_at AT3G18450 [PLAC8 family protein] -0.678 -0.029
67 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.654 0.647
68 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.632 0.113
69 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.616 1.165
70 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.611 0.542
71 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.580 1.026
72 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.574 0.114
73 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.535 0.711
74 258054_at AT3G16240 AQP1, ATTIP2;1, DELTA-TIP, delta tonoplast integral protein, DELTA-TIP1, TIP2;1 -0.526 0.344
75 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.521 0.686
76 266693_at AT2G19800 MIOX2, myo-inositol oxygenase 2 -0.501 0.028
77 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.500 0.383
78 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.494 0.335
79 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.492 0.089
80 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.492 0.646
81 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 -0.485 0.374
82 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.484 0.264
83 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.470 0.201
84 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.453 0.039
85 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.452 0.504
86 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.448 0.180
87 258765_at AT3G10710 RHS12, root hair specific 12 -0.448 0.495
88 266191_at AT2G39040 [Peroxidase superfamily protein] -0.443 0.725
89 261567_at AT1G33055 unknown -0.437 -0.176
90 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.435 0.375
91 249934_at AT5G22410 RHS18, root hair specific 18 -0.430 0.354
92 260846_at AT1G17300 unknown -0.422 0.188
93 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] -0.422 -0.019
94 267439_at AT2G19060 [SGNH hydrolase-type esterase superfamily protein] -0.418 0.322
95 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.408 0.149
96 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase -0.382 0.037
97 258527_at AT3G06850 BCE2, DIN3, DARK INDUCIBLE 3, LTA1 -0.375 0.022
98 259466_at AT1G19050 ARR7, response regulator 7 -0.373 -0.124
99 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.372 0.036
100 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.371 0.216
101 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.362 0.437
102 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.356 0.219
103 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.352 0.338
104 249972_at AT5G19040 ATIPT5, Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, IPT5, isopentenyltransferase 5 -0.347 -0.053
105 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.347 0.159
106 246825_at AT5G26260 [TRAF-like family protein] -0.343 0.104
107 248961_at AT5G45650 [subtilase family protein] -0.341 0.346
108 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 -0.335 0.458
109 253353_at AT4G33730 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.334 0.369
110 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.333 -0.112
111 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 -0.324 0.329
112 263126_at AT1G78460 [SOUL heme-binding family protein] -0.324 0.028
113 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.317 0.198
114 249847_at AT5G23210 SCPL34, serine carboxypeptidase-like 34 -0.317 0.366
115 253914_at AT4G27400 [Late embryogenesis abundant (LEA) protein-related] -0.316 0.630
116 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT -0.304 -0.157
117 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase -0.303 0.155
118 260774_at AT1G78290 SNRK2-8, SNF1-RELATED PROTEIN KINASE 2-8, SNRK2.8, SNF1-RELATED PROTEIN KINASE 2.8, SRK2C, SNF1-RELATED PROTEIN KINASE 2C -0.295 -0.033
119 247320_at AT5G64040 PSAN -0.295 0.116
120 265102_at AT1G30870 [Peroxidase superfamily protein] -0.292 0.223
121 250778_at AT5G05500 MOP10 -0.288 0.243