4.0:Information of module
Whole root - low pH 12H
In comparison with Col PSTDC3000 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 1.131e-17
GO:0006952 defense response BP 4.198e-16
GO:0042221 response to chemical BP 6.849e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 1.268e-10
GO:0090627 plant epidermal cell differentiation BP 1.684e-10
GO:0010054 trichoblast differentiation BP 3.538e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - low pH 12H		 Log2 signal ratio
Col PSTDC3000 24h
1 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 0.994 0.039
2 249893_at AT5G22555 unknown 0.761 0.010
3 247061_at AT5G66780 unknown 0.741 0.052
4 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.635 -0.034
5 258203_at AT3G13950 unknown 0.631 0.701
6 253796_at AT4G28460 unknown 0.628 0.451
7 262381_at AT1G72900 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.616 0.535
8 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.608 0.757
9 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.596 0.724
10 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.591 0.248
11 252345_at AT3G48640 unknown 0.575 0.596
12 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.546 0.474
13 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.527 0.436
14 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.491 0.199
15 264543_at AT1G55790 [FUNCTIONS IN: metal ion binding] 0.476 0.629
16 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 0.465 0.319
17 259743_at AT1G71140 [MATE efflux family protein] 0.441 0.036
18 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] 0.387 0.464
19 245076_at AT2G23170 GH3.3 0.381 0.875
20 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.379 0.012
21 261249_at AT1G05880 ARI12, ARIADNE 12, ATARI12, ARABIDOPSIS ARIADNE 12 0.374 0.647
22 257061_at AT3G18250 [Putative membrane lipoprotein] 0.370 0.413
23 259428_at AT1G01560 ATMPK11, MAP kinase 11, MPK11, MAP kinase 11 0.365 0.463
24 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.360 -0.015
25 257206_at AT3G16530 [Legume lectin family protein] 0.352 0.018
26 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.333 0.225
27 250983_at AT5G02780 GSTL1, glutathione transferase lambda 1 0.323 0.739
28 262373_at AT1G73120 unknown 0.320 0.040
29 257140_at AT3G28910 ATMYB30, MYB30, myb domain protein 30 0.316 -0.082
30 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.309 0.380
31 245304_at AT4G15630 [Uncharacterised protein family (UPF0497)] 0.308 -0.077
32 265842_at AT2G35700 ATERF38, ERF FAMILY PROTEIN 38, ERF38, ERF family protein 38 0.307 -0.041
33 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.301 0.743
34 255086_at AT4G09300 [LisH and RanBPM domains containing protein] 0.295 0.422
35 256177_at AT1G51620 [Protein kinase superfamily protein] 0.295 0.417
36 261633_at AT1G49930 unknown 0.290 -0.096
37 249029_at AT5G44870 LAZ5, LAZARUS 5, TTR1, tolerance to Tobacco ringspot virus 1 0.290 0.094
38 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 0.286 0.848
39 260239_at AT1G74360 [Leucine-rich repeat protein kinase family protein] 0.276 0.759
40 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.272 0.820
41 245567_at AT4G14630 GLP9, germin-like protein 9 0.262 0.542
42 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.242 0.170
43 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.233 0.712
44 250676_at AT5G06320 NHL3, NDR1/HIN1-like 3 0.232 0.181
45 260939_at AT1G45180 [RING/U-box superfamily protein] 0.230 -0.005
46 248381_at AT5G51830 [pfkB-like carbohydrate kinase family protein] 0.227 0.320
47 249645_at AT5G36910 THI2.2, thionin 2.2 0.225 -0.392
48 249941_at AT5G22270 unknown 0.222 0.156
49 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor 0.218 0.023
50 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.218 0.664
51 252115_at AT3G51600 LTP5, lipid transfer protein 5 0.215 -0.135
52 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 0.214 0.465
53 263937_at AT2G35910 [RING/U-box superfamily protein] 0.214 0.138
54 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 0.210 -0.018
55 257672_at AT3G20300 unknown 0.210 -0.129
56 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.210 0.584
57 248701_at AT5G48410 ATGLR1.3, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, GLR1.3, glutamate receptor 1.3 0.209 0.523
58 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.207 0.338
59 265637_at AT2G27490 ATCOAE 0.206 0.079
60 259980_at AT1G76520 [Auxin efflux carrier family protein] 0.206 0.035
61 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.881 -0.034
62 260495_at AT2G41810 unknown -0.863 -0.167
63 257720_at AT3G18450 [PLAC8 family protein] -0.727 0.012
64 267222_at AT2G43880 [Pectin lyase-like superfamily protein] -0.699 0.036
65 245674_at AT1G56680 [Chitinase family protein] -0.678 -0.051
66 264672_at AT1G09750 [Eukaryotic aspartyl protease family protein] -0.669 -0.759
67 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.630 -0.010
68 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.597 -0.497
69 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 -0.595 -0.061
70 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.575 0.001
71 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.567 -0.283
72 262658_at AT1G14220 [Ribonuclease T2 family protein] -0.542 -0.047
73 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.537 0.517
74 265683_at AT2G24400 SAUR38, SMALL AUXIN UPREGULATED RNA 38 -0.495 -0.003
75 246530_at AT5G15725 GLV9, GOLVEN 9 -0.476 0.038
76 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] -0.474 -0.006
77 246403_at AT1G57590 [Pectinacetylesterase family protein] -0.467 -0.143
78 266191_at AT2G39040 [Peroxidase superfamily protein] -0.457 -0.059
79 249718_at AT5G35740 [Carbohydrate-binding X8 domain superfamily protein] -0.451 -0.295
80 249522_at AT5G38700 unknown -0.437 0.025
81 246825_at AT5G26260 [TRAF-like family protein] -0.424 0.120
82 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.423 -0.109
83 252536_at AT3G45700 [Major facilitator superfamily protein] -0.417 -0.049
84 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] -0.417 0.003
85 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.390 0.237
86 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.386 -0.096
87 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.382 0.463
88 259525_at AT1G12560 ATEXP7, ATEXPA7, expansin A7, ATHEXP ALPHA 1.26, EXP7, EXPA7, expansin A7 -0.379 -0.113
89 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] -0.374 0.182
90 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.372 0.002
91 257418_at AT1G30850 RSH4, root hair specific 4 -0.360 0.926
92 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.353 -0.069
93 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] -0.351 0.010
94 249814_at AT5G23840 [MD-2-related lipid recognition domain-containing protein] -0.349 0.020
95 267582_at AT2G41970 [Protein kinase superfamily protein] -0.347 0.030
96 257582_at AT1G50720 [Stigma-specific Stig1 family protein] -0.339 -0.014
97 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.338 -0.213
98 256847_at AT3G27950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.327 0.006
99 261099_at AT1G62980 ATEXP18, ATEXPA18, expansin A18, ATHEXP ALPHA 1.25, EXP18, EXPANSIN 18, EXPA18, expansin A18 -0.327 -0.079
100 262864_at AT1G64920 [UDP-Glycosyltransferase superfamily protein] -0.326 0.011
101 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.312 -0.371
102 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] -0.312 0.327
103 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.310 0.068
104 250717_at AT5G06200 CASP4, Casparian strip membrane domain protein 4 -0.304 -0.043
105 267128_at AT2G23620 ATMES1, ARABIDOPSIS THALIANA METHYL ESTERASE 1, MES1, methyl esterase 1 -0.304 -0.051
106 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.298 -0.070
107 250778_at AT5G05500 MOP10 -0.287 0.007
108 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 -0.285 0.019
109 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.281 -0.015
110 247586_at AT5G60660 PIP2;4, plasma membrane intrinsic protein 2;4, PIP2F -0.273 -0.127
111 246991_at AT5G67400 RHS19, root hair specific 19 -0.266 0.008
112 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.266 -0.024
113 250591_at AT5G07720 XXT3, xyloglucan xylosyltransferase 3 -0.264 -0.088
114 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.262 0.414
115 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.261 0.014
116 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 -0.259 -0.091
117 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.253 -0.045
118 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 -0.245 0.079
119 265042_at AT1G04040 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.242 -0.595