4.0:Information of module
Whole root - S 72H
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010583 response to cyclopentenone BP 2.586e-11
GO:0009404 toxin metabolic process BP 9.150e-11
GO:0009407 toxin catabolic process BP 9.150e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016053 organic acid biosynthetic process BP 2.592e-06
GO:0046394 carboxylic acid biosynthetic process BP 2.592e-06
GO:0072330 monocarboxylic acid biosynthetic process BP 7.466e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Whole root - S 72H		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 267389_at AT2G44460 BGLU28, beta glucosidase 28 1.441 -0.045
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 1.255 -0.020
3 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 1.229 0.037
4 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 1.206 0.040
5 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 1.088 0.050
6 259133_at AT3G05400 [Major facilitator superfamily protein] 0.986 0.233
7 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.945 -0.109
8 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.871 0.098
9 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.858 -0.100
10 257421_at AT1G12030 unknown 0.780 0.108
11 255105_at AT4G08620 SULTR1;1, sulphate transporter 1;1 0.705 0.073
12 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.676 -0.052
13 256450_at AT1G75290 [NAD(P)-binding Rossmann-fold superfamily protein] 0.670 -0.005
14 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.517 -0.038
15 248822_at AT5G47000 [Peroxidase superfamily protein] 0.514 -0.095
16 252989_at AT4G38420 sks9, SKU5 similar 9 0.501 0.091
17 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.484 0.157
18 253525_at AT4G31330 unknown 0.479 -0.054
19 261475_at AT1G14550 [Peroxidase superfamily protein] 0.461 -0.051
20 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 0.460 0.008
21 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.453 -0.094
22 247061_at AT5G66780 unknown 0.447 -0.128
23 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] 0.439 -0.110
24 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 0.417 0.105
25 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.416 0.040
26 256584_at AT3G28750 unknown 0.415 0.013
27 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.402 -0.063
28 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.388 -0.149
29 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.356 0.053
30 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.346 0.316
31 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 0.342 -0.018
32 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.341 -0.155
33 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.334 0.010
34 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 0.324 -0.079
35 260540_at AT2G43500 NLP8, NIN-like protein 8 0.322 -0.213
36 253317_at AT4G33960 unknown 0.318 0.109
37 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.313 -0.076
38 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.313 -0.135
39 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.306 -0.030
40 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.305 0.001
41 257595_at AT3G24750 unknown 0.291 -0.015
42 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 0.283 0.084
43 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 0.281 -0.127
44 257262_at AT3G21890 BBX31, B-box domain protein 31 0.281 -0.015
45 245855_at AT5G13550 SULTR4;1, sulfate transporter 4.1 0.271 0.126
46 258179_at AT3G21690 [MATE efflux family protein] 0.255 -0.121
47 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.254 -0.104
48 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.252 0.065
49 246584_at AT5G14730 unknown 0.247 -0.078
50 245882_at AT5G09470 DIC3, dicarboxylate carrier 3 0.247 -0.049
51 247922_at AT5G57500 [Galactosyltransferase family protein] 0.240 0.002
52 267287_at AT2G23630 sks16, SKU5 similar 16 0.240 0.058
53 249721_at AT5G24655 LSU4, RESPONSE TO LOW SULFUR 4 0.235 -0.028
54 264745_at AT1G62180 5'adenylylphosphosulfate reductase 2 0.228 0.086
55 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 0.226 0.030
56 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.225 -0.158
57 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.225 -0.064
58 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.222 -0.009
59 264052_at AT2G22330 CYP79B3, cytochrome P450, family 79, subfamily B, polypeptide 3 -0.702 -0.045
60 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 -0.692 -0.134
61 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] -0.678 0.023
62 265611_at AT2G25510 unknown -0.639 0.007
63 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 -0.621 0.005
64 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 -0.606 0.131
65 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.570 0.025
66 261157_at AT1G34510 [Peroxidase superfamily protein] -0.566 -0.147
67 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.565 0.138
68 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.564 -0.011
69 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.555 -0.005
70 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 -0.548 0.039
71 249112_at AT5G43780 APS4 -0.531 -0.044
72 258362_at AT3G14280 unknown -0.482 -0.106
73 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.449 0.018
74 260495_at AT2G41810 unknown -0.435 -0.144
75 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 -0.374 -0.056
76 247710_at AT5G59260 LecRK-II.1, L-type lectin receptor kinase II.1 -0.350 0.065
77 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.347 -0.037
78 250664_at AT5G07080 [HXXXD-type acyl-transferase family protein] -0.347 -0.126
79 252882_at AT4G39675 unknown -0.344 0.076
80 251784_at AT3G55330 PPL1, PsbP-like protein 1 -0.341 0.112
81 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.341 0.174
82 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 -0.314 0.022
83 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 -0.312 -0.083
84 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.301 0.058
85 260744_at AT1G15010 unknown -0.276 -0.016
86 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.273 0.085
87 257670_at AT3G20340 unknown -0.264 -0.153
88 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.261 -0.090
89 265945_at AT2G19500 ATCKX2, CKX2, cytokinin oxidase 2 -0.256 -0.092
90 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.245 -0.556
91 253038_at AT4G37790 HAT22 -0.240 0.079
92 265387_at AT2G20670 unknown -0.238 0.083
93 253908_at AT4G27260 GH3.5, WES1 -0.231 0.062
94 245076_at AT2G23170 GH3.3 -0.229 0.091
95 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 -0.228 0.099
96 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.226 -0.069
97 250938_at AT5G03180 [RING/U-box superfamily protein] -0.224 0.011
98 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.219 -0.304
99 255881_at AT1G67070 DIN9, DARK INDUCIBLE 9, PMI2, PHOSPHOMANNOSE ISOMERASE 2 -0.215 -0.079
100 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.210 0.001
101 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 -0.207 0.215
102 258225_at AT3G15630 unknown -0.198 0.105
103 262047_at AT1G80160 GLYI7, glyoxylase I 7 -0.197 0.046
104 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.194 -0.069
105 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 -0.194 0.071
106 250640_at AT5G07150 [Leucine-rich repeat protein kinase family protein] -0.191 -0.234
107 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 -0.190 -0.140
108 252250_at AT3G49790 [Carbohydrate-binding protein] -0.189 -0.009
109 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.188 0.006
110 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.185 0.023
111 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.183 -0.025
112 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.182 0.012
113 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.179 -0.031
114 257172_at AT3G23700 [Nucleic acid-binding proteins superfamily] -0.175 0.146
115 251310_at AT3G61150 HD-GL2-1, HOMEODOMAIN-GLABRA2 1, HDG1, homeodomain GLABROUS 1 -0.175 0.148