4.0:Information of module
FHY3p far-red+DEX
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0033993 response to lipid BP 3.280e-05
GO:0006857 oligopeptide transport BP 9.019e-05
GO:0015833 peptide transport BP 9.019e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044283 small molecule biosynthetic process BP 7.016e-08
GO:0016125 sterol metabolic process BP 7.942e-07
GO:0044711 single-organism biosynthetic process BP 1.110e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FHY3p far-red+DEX		 Log2 signal ratio
Leafminer damaged seedlings
1 267580_at AT2G41990 unknown 0.439 -0.044
2 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] 0.362 -0.268
3 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] 0.247 -0.054
4 251610_at AT3G57930 unknown 0.245 0.017
5 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 0.244 -0.242
6 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] 0.242 0.018
7 263789_at AT2G24560 [GDSL-like Lipase/Acylhydrolase family protein] 0.212 0.055
8 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.203 0.576
9 257413_at AT1G22910 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.203 0.035
10 259852_at AT1G72280 AERO1, endoplasmic reticulum oxidoreductins 1, ERO1, endoplasmic reticulum oxidoreductins 1 0.201 0.528
11 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.199 0.716
12 251365_at AT3G61310 AHL11, AT-hook motif nuclear localized protein 11 0.192 -0.246
13 259733_at AT1G77480 [Eukaryotic aspartyl protease family protein] 0.187 -0.199
14 248764_at AT5G47640 NF-YB2, nuclear factor Y, subunit B2 0.182 -0.207
15 251541_at AT3G58750 CSY2, citrate synthase 2 0.178 0.154
16 266809_at AT2G29970 SMXL7, SMAX1-like 7 0.177 -0.059
17 267019_at AT2G39130 [Transmembrane amino acid transporter family protein] 0.175 -0.080
18 254293_at AT4G23060 IQD22, IQ-domain 22 0.174 0.328
19 245617_at AT4G14490 [SMAD/FHA domain-containing protein ] 0.174 -0.055
20 256884_at AT3G15200 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.172 0.331
21 260276_at AT1G80450 [VQ motif-containing protein] 0.172 0.697
22 261101_at AT1G63030 ddf2, DWARF AND DELAYED FLOWERING 2 0.172 0.038
23 262550_at AT1G31310 [hydroxyproline-rich glycoprotein family protein] 0.171 0.037
24 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 0.168 0.422
25 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.162 0.172
26 250327_at AT5G12050 unknown 0.156 -0.252
27 266929_at AT2G45850 AHL9, AT-hook motif nuclear localized protein 9 0.155 -0.327
28 259050_at AT3G03360 [F-box/RNI-like superfamily protein] 0.153 -0.191
29 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.152 1.146
30 247464_at AT5G62070 IQD23, IQ-domain 23 0.152 0.012
31 267084_at AT2G41180 SIB2, sigma factor binding protein 2 0.147 -0.099
32 250145_at AT5G14690 unknown 0.147 -0.008
33 262811_at AT1G11700 unknown 0.146 -0.572
34 258078_at AT3G25870 unknown 0.142 0.257
35 263754_at AT2G21510 [DNAJ heat shock N-terminal domain-containing protein] 0.139 0.556
36 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 0.139 0.053
37 251057_at AT5G01780 [2-oxoglutarate-dependent dioxygenase family protein] 0.139 -0.131
38 257427_at AT1G79060 unknown 0.138 -0.185
39 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.135 0.829
40 246911_at AT5G25810 tny, TINY 0.134 -0.000
41 259755_at AT1G71070 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.133 -0.031
42 247349_at AT5G63820 unknown 0.132 0.064
43 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.132 0.543
44 263951_at AT2G35960 NHL12, NDR1/HIN1-like 12 0.131 -0.265
45 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.131 -0.171
46 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.129 -0.268
47 245382_at AT4G17800 AHL23, AT-hook motif nuclear localized protein 23 0.128 0.015
48 254362_at AT4G22160 unknown 0.127 -0.180
49 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.126 0.381
50 266880_at AT2G44770 [ELMO/CED-12 family protein] 0.125 -0.022
51 250106_at AT5G16640 [Pentatricopeptide repeat (PPR) superfamily protein] 0.125 -0.143
52 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.124 0.843
53 257237_at AT3G14890 [phosphoesterase] 0.122 -0.062
54 251326_at AT3G61590 HS, HWS, HAWAIIAN SKIRT 0.121 0.000
55 245269_at AT4G14500 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.119 0.039
56 256282_at AT3G12550 FDM3, factor of DNA methylation 3 0.119 -0.084
57 266131_at AT2G45160 ATHAM1, ARABIDOPSIS THALIANA HAIRY MERISTEM 1, HAM1, HAIRY MERISTEM 1, LOM1, LOST MERISTEMS 1 0.119 -0.191
58 262512_at AT1G17145 [RING/U-box superfamily protein] 0.119 0.071
59 251374_at AT3G60390 HAT3, homeobox-leucine zipper protein 3 0.117 -0.256
60 267561_at AT2G45590 [Protein kinase superfamily protein] 0.117 -0.112
61 251206_at AT3G63090 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.116 0.025
62 267077_at AT2G40970 MYBC1 0.116 -0.103
63 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.116 -0.062
64 250479_at AT5G10260 AtRABH1e, RAB GTPase homolog H1E, RABH1e, RAB GTPase homolog H1E 0.112 -0.070
65 265661_at AT2G24360 [Protein kinase superfamily protein] 0.111 0.049
66 247071_at AT5G66640 DAR3, DA1-related protein 3 0.111 0.500
67 260744_at AT1G15010 unknown 0.109 0.917
68 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.109 0.514
69 246796_at AT5G26770 unknown 0.109 0.249
70 253432_at AT4G32450 MEF8S, MEF8 similar 0.108 -0.152
71 261853_at AT1G50660 unknown 0.108 -0.162
72 248460_at AT5G50915 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.107 -0.373
73 255424_at AT4G03340 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.106 -0.054
74 250901_at AT5G03530 ATRAB, ATRAB ALPHA, ATRAB18B, ATRABC2A, ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RABC2A, RAB GTPase homolog C2A 0.105 -0.274
75 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.105 1.222
76 245742_at AT1G44170 ALDH3H1, aldehyde dehydrogenase 3H1, ALDH4, aldehyde dehydrogenase 4 0.102 0.019
77 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 -0.153 0.265
78 265308_at AT2G20300 ALE2, Abnormal Leaf Shape 2 -0.144 -0.259
79 248961_at AT5G45650 [subtilase family protein] -0.116 -0.398
80 262431_at AT1G47540 [Scorpion toxin-like knottin superfamily protein] -0.107 0.020
81 248424_at AT5G51680 [hydroxyproline-rich glycoprotein family protein] -0.103 0.265
82 247231_at AT5G65230 AtMYB53, myb domain protein 53, MYB53, myb domain protein 53 -0.101 -0.026
83 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] -0.100 -0.166
84 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] -0.100 -0.013
85 251925_at AT3G54000 unknown -0.099 0.060
86 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] -0.097 0.058
87 255622_at AT4G01070 GT72B1, UGT72B1, UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1 -0.094 -0.054
88 262069_at AT1G80090 CBSX4, CBS domain containing protein 4 -0.094 -0.062
89 244999_at ATCG00190 RPOB, RNA polymerase subunit beta -0.094 -0.075
90 254193_at AT4G23870 unknown -0.094 0.036
91 248750_at AT5G47530 [Auxin-responsive family protein] -0.092 -0.031
92 247070_at AT5G66815 unknown -0.092 0.005
93 256926_at AT3G22540 unknown -0.091 -0.100
94 258685_at AT3G07830 PGA3, polygalacturonase 3 -0.091 0.046
95 266516_at AT2G47880 [Glutaredoxin family protein] -0.090 0.088
96 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 -0.088 0.089
97 257843_at AT3G28400 [hAT-like transposase family (hobo/Ac/Tam3), has a 4.6e-39 P-value blast match to GB:CAA29005 ORFa of Maize Ac (hAT-element) (Zea mays)] -0.088 -0.003
98 261641_at AT1G27670 unknown -0.088 -0.028
99 266739_at AT2G46730 [pseudogene] -0.087 -0.078
100 254646_at AT4G18530 unknown -0.086 0.369
101 263528_at AT2G24800 [Peroxidase superfamily protein] -0.086 0.017
102 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 -0.085 0.215
103 253192_at AT4G35370 [Transducin/WD40 repeat-like superfamily protein] -0.085 -0.052
104 266766_at AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 -0.085 -0.028
105 259982_at AT1G76410 ATL8 -0.084 0.077
106 264480_at AT1G77300 ASHH2, ASH1 HOMOLOG 2, CCR1, CAROTENOID CHLOROPLAST REGULATORY1, EFS, EARLY FLOWERING IN SHORT DAYS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 -0.084 -0.039
107 257231_at AT3G16550 DEG12, degradation of periplasmic proteins 12, DEGP12, DEGP protease 12 -0.083 0.015
108 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 -0.082 0.569
109 261035_at AT1G17390 [similar to reverse transcriptase-related [Arabidopsis thaliana] (TAIR:AT4G12275.1)] -0.082 0.029
110 258959_at AT3G10600 CAT7, cationic amino acid transporter 7 -0.082 -0.040
111 266543_at AT2G35075 unknown -0.081 0.030
112 260631_at AT1G62350 [Pentatricopeptide repeat (PPR) superfamily protein] -0.081 0.000
113 263872_at AT2G21770 CESA09, CESA9, cellulose synthase A9 -0.080 -0.044
114 246626_at AT1G48870 [Transducin/WD40 repeat-like superfamily protein] -0.079 -0.054
115 260935_at AT1G45110 [Tetrapyrrole (Corrin/Porphyrin) Methylases] -0.079 0.007
116 262872_at AT1G64690 BLT, BRANCHLESS TRICHOMES -0.078 -0.278
117 254770_at AT4G13340 LRX3, leucine-rich repeat/extensin 3 -0.078 -0.104
118 245254_at AT4G14680 APS3 -0.078 -0.010
119 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana -0.078 0.395
120 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.078 -0.094
121 267555_at AT2G32765 ATSUMO5, SUM5, SUMO 5, SUMO5, small ubiquitinrelated modifier 5 -0.077 -0.287
122 263176_at AT1G05530 UGT2, UDP-GLUCOSYL TRANSFERASE 2, UGT75B2, UDP-glucosyl transferase 75B2 -0.076 -0.042
123 253478_at AT4G32350 [Regulator of Vps4 activity in the MVB pathway protein] -0.076 -0.270
124 263721_at AT2G13630 [F-box associated ubiquitination effector family protein] -0.076 0.034
125 256420_at AT1G33475 [SNARE-like superfamily protein] -0.076 -0.085
126 258266_at AT3G15860 unknown -0.076 -0.011
127 258543_at AT3G06870 [proline-rich family protein] -0.075 -0.036
128 248292_at AT5G53030 unknown -0.075 0.101
129 260388_at AT1G74070 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] -0.075 -0.360
130 263730_at AT1G60090 BGLU4, beta glucosidase 4 -0.075 0.001
131 250200_at AT5G14130 [Peroxidase superfamily protein] -0.074 0.002
132 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.074 -0.112
133 246552_at AT5G15420 unknown -0.074 -0.020
134 265296_at AT2G14060 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.074 -0.024
135 264813_at AT2G17890 CPK16, calcium-dependent protein kinase 16 -0.074 -0.048
136 267281_at AT2G19400 [AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein] -0.072 -0.073
137 250136_at AT5G15380 DRM1, domains rearranged methylase 1 -0.072 -0.020
138 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.072 -0.053
139 261367_at AT1G53080 [Legume lectin family protein] -0.071 0.048
140 262918_at AT1G65000 unknown -0.071 0.097
141 260074_at AT1G73640 AtRABA6a, RAB GTPase homolog A6A, RABA6a, RAB GTPase homolog A6A -0.071 -0.065
142 251330_at AT3G61550 [RING/U-box superfamily protein] -0.070 -0.082
143 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.070 -0.279
144 259220_at AT3G03550 [RING/U-box superfamily protein] -0.070 0.042
145 262315_at AT1G70990 [proline-rich family protein] -0.070 -0.004
146 249211_at AT5G42680 unknown -0.069 -0.300
147 262772_at AT1G13210 ACA.l, autoinhibited Ca2+/ATPase II -0.069 0.443
148 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.069 -0.198
149 248265_at AT5G53430 ATX5, SDG29, SET domain group 29, SET29 -0.068 -0.160
150 245824_at AT1G57943 ATPUP17, purine permease 17, PUP17, purine permease 17 -0.068 0.067
151 262705_at AT1G16260 [Wall-associated kinase family protein] -0.067 -0.145