4.0:Information of module
WT Root Hypoxia
In comparison with 3.5h KNO3 Whole root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 3.327e-17
GO:0070482 response to oxygen levels BP 5.852e-17
GO:0001666 response to hypoxia BP 8.667e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009955 adaxial/abaxial pattern specification BP 1.040e-04
GO:0010374 stomatal complex development BP 1.854e-04
GO:0009943 adaxial/abaxial axis specification BP 3.702e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT Root Hypoxia		 Log2 signal ratio
3.5h KNO3 Whole root
1 250464_at AT5G10040 unknown 1.736 -0.041
2 255807_at AT4G10270 [Wound-responsive family protein] 1.591 -0.067
3 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.436 -0.051
4 253298_at AT4G33560 [Wound-responsive family protein] 1.385 -0.095
5 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.348 -0.046
6 259879_at AT1G76650 CML38, calmodulin-like 38 1.234 -0.014
7 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.224 -0.017
8 247431_at AT5G62520 SRO5, similar to RCD one 5 1.207 0.062
9 257925_at AT3G23170 unknown 1.158 -0.054
10 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.149 -0.100
11 254200_at AT4G24110 unknown 1.107 -0.096
12 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.090 0.012
13 253060_at AT4G37710 [VQ motif-containing protein] 1.073 0.100
14 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 1.024 -0.007
15 249384_at AT5G39890 unknown 1.020 0.002
16 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 1.004 -0.042
17 245226_at AT3G29970 [B12D protein] 0.951 -0.119
18 250152_at AT5G15120 unknown 0.933 -0.003
19 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.907 -0.129
20 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.864 -0.006
21 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.844 0.005
22 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.796 -0.010
23 266998_at AT2G34400 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.782 -0.030
24 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.780 -0.036
25 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.775 0.061
26 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.737 -0.081
27 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.727 0.033
28 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.716 0.020
29 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.712 -0.031
30 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.711 -0.136
31 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 0.707 0.032
32 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.687 0.019
33 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.682 0.077
34 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.653 0.013
35 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.651 -0.041
36 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.630 -0.072
37 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.611 0.046
38 256497_at AT1G31580 CXC750, ECS1 0.593 0.070
39 264788_at AT2G17880 DJC24, DNA J protein C24 0.591 -0.097
40 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.581 -0.046
41 247024_at AT5G66985 unknown 0.564 -0.055
42 245401_at AT4G17670 unknown 0.556 0.020
43 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.531 -0.047
44 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.527 0.036
45 249234_at AT5G42200 [RING/U-box superfamily protein] 0.526 -0.042
46 256262_at AT3G12150 unknown 0.521 -0.037
47 255945_at AT5G28610 unknown 0.510 -0.181
48 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.672 0.127
49 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.522 0.041
50 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.517 0.043
51 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.451 -0.006
52 266962_at AT2G39435 TRM18, TON1 Recruiting Motif 18 -0.381 0.105
53 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.355 0.030
54 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.344 -0.045
55 254632_at AT4G18630 unknown -0.342 0.084
56 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.341 0.044
57 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 -0.334 0.088
58 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.331 0.038
59 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.309 0.035
60 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 -0.305 0.021
61 247536_at AT5G61650 CYCP4, CYCP4;2, CYCLIN P4;2 -0.304 -0.066
62 258646_at AT3G08040 ATFRD3, FRD3, FERRIC REDUCTASE DEFECTIVE 3, MAN1, MANGANESE ACCUMULATOR 1 -0.304 0.056
63 246826_at AT5G26310 UGT72E3 -0.301 -0.047
64 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.300 0.043
65 262865_at AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 -0.294 -0.012
66 266222_at AT2G28780 unknown -0.291 -0.028
67 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 -0.290 0.031
68 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.287 -0.037
69 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 -0.287 0.017
70 267550_at AT2G32800 AP4.3A, LecRK-S.2, L-type lectin receptor kinase S.2 -0.286 0.116
71 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.279 0.041
72 262863_at AT1G64910 [UDP-Glycosyltransferase superfamily protein] -0.273 -0.025
73 252204_at AT3G50340 unknown -0.271 -0.030
74 267382_at AT2G44300 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.271 0.018
75 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.268 0.035
76 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.260 -0.134
77 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.256 0.032
78 255877_at AT2G40460 [Major facilitator superfamily protein] -0.255 0.072
79 267287_at AT2G23630 sks16, SKU5 similar 16 -0.246 0.059
80 251895_at AT3G54420 ATCHITIV, CHITINASE CLASS IV, ATEP3, homolog of carrot EP3-3 chitinase, CHIV, EP3, homolog of carrot EP3-3 chitinase -0.241 -0.075
81 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 -0.236 0.059
82 253483_at AT4G31910 BAT1, BR-related AcylTransferase1, PIZ, PIZZA -0.235 0.029
83 245357_at AT4G17560 [Ribosomal protein L19 family protein] -0.235 0.059
84 267021_at AT2G39300 unknown -0.229 -0.079
85 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.218 0.049
86 250882_at AT5G04000 unknown -0.217 -0.152
87 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.212 -0.047
88 251326_at AT3G61590 HS, HWS, HAWAIIAN SKIRT -0.210 0.006
89 247284_at AT5G64410 ATOPT4, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, OPT4, oligopeptide transporter 4 -0.207 -0.025
90 267542_at AT2G32740 ATGT13, ARABIDOPSIS GALACTOSYLTRANSFERASE 13, GT13, galactosyltransferase 13 -0.199 0.004
91 257814_at AT3G25110 AtFaTA, fatA acyl-ACP thioesterase, FaTA, fatA acyl-ACP thioesterase -0.199 -0.011
92 256217_at AT1G56320 unknown -0.198 -0.062
93 266900_at AT2G34610 unknown -0.191 0.004