4.0:Information of module
MPK6 ox Root Hypoxia
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 2.633e-19
GO:0070482 response to oxygen levels BP 4.710e-19
GO:0001666 response to hypoxia BP 8.097e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010431 seed maturation BP 9.794e-08
GO:0001101 response to acid chemical BP 1.266e-07
GO:0009725 response to hormone BP 1.362e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
MPK6 ox Root Hypoxia		 Log2 signal ratio
root callus inducing medium 12 h
1 250464_at AT5G10040 unknown 1.742 -0.783
2 255807_at AT4G10270 [Wound-responsive family protein] 1.586 -0.447
3 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.458 -0.335
4 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.381 -0.500
5 253298_at AT4G33560 [Wound-responsive family protein] 1.283 -0.271
6 259879_at AT1G76650 CML38, calmodulin-like 38 1.231 -0.532
7 245226_at AT3G29970 [B12D protein] 1.214 -0.713
8 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.208 -0.597
9 247431_at AT5G62520 SRO5, similar to RCD one 5 1.205 -0.238
10 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.183 -0.539
11 257925_at AT3G23170 unknown 1.143 -0.584
12 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.125 -0.427
13 254200_at AT4G24110 unknown 1.104 -0.420
14 253060_at AT4G37710 [VQ motif-containing protein] 1.080 -0.751
15 253616_at AT4G30380 [Barwin-related endoglucanase] 1.060 -0.125
16 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 1.035 -0.308
17 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 1.033 -0.636
18 249384_at AT5G39890 unknown 0.985 -0.296
19 250152_at AT5G15120 unknown 0.957 -0.148
20 255568_at AT4G01250 AtWRKY22, WRKY22 0.891 -0.464
21 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.889 -0.133
22 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.865 -0.692
23 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.859 -0.281
24 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.814 -0.503
25 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.806 -0.121
26 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.800 -0.221
27 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.796 -0.210
28 266998_at AT2G34400 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.790 -0.047
29 259921_at AT1G72540 [Protein kinase superfamily protein] 0.783 -0.646
30 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.759 -0.437
31 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.731 -0.156
32 246200_at AT4G37240 unknown 0.723 -0.333
33 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.718 -0.774
34 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.716 -0.192
35 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.713 -0.226
36 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.706 -0.154
37 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.664 -0.249
38 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.657 -0.281
39 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.644 0.032
40 258991_at AT3G08820 [Pentatricopeptide repeat (PPR) superfamily protein] 0.622 0.118
41 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.617 -0.464
42 255532_at AT4G02170 unknown 0.602 -0.229
43 248160_at AT5G54470 BBX29, B-box domain protein 29 0.598 -0.419
44 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.592 -0.238
45 245401_at AT4G17670 unknown 0.590 -0.336
46 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.586 -0.378
47 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.585 -0.303
48 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.580 -0.107
49 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.575 -0.156
50 255883_at AT1G20270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.574 -0.085
51 257922_at AT3G23150 ETR2, ethylene response 2 0.573 -0.129
52 262741_at AT1G28760 [Uncharacterized conserved protein (DUF2215)] 0.572 -0.255
53 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.567 -0.143
54 256262_at AT3G12150 unknown 0.565 -0.253
55 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.565 -0.483
56 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.555 -0.309
57 262392_at AT1G49520 [SWIB complex BAF60b domain-containing protein] 0.554 -0.399
58 266800_at AT2G22880 [VQ motif-containing protein] 0.552 -0.142
59 264648_at AT1G09080 BIP3, binding protein 3 0.535 0.278
60 264788_at AT2G17880 DJC24, DNA J protein C24 0.535 -0.638
61 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.535 -0.123
62 247024_at AT5G66985 unknown 0.532 -0.393
63 245324_at AT4G17260 [Lactate/malate dehydrogenase family protein] 0.500 -0.304
64 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.498 -0.100
65 259996_at AT1G67910 unknown 0.496 -0.888
66 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.492 -0.150
67 257466_at AT1G62840 unknown 0.490 0.020
68 267230_at AT2G44080 ARL, ARGOS-like 0.484 -0.267
69 249234_at AT5G42200 [RING/U-box superfamily protein] 0.481 -0.795
70 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B 0.480 -0.501
71 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.473 -0.614
72 260005_at AT1G67920 unknown 0.458 -0.359
73 266220_at AT2G28755 [UDP-D-glucuronate carboxy-lyase-related] 0.454 -0.003
74 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.451 -0.005
75 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.450 -0.364
76 246158_at AT5G19855 AtRbcX2, RbcX2, homologue of cyanobacterial RbcX 2 0.446 -0.001
77 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE 0.440 -0.059
78 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.438 -0.259
79 264836_at AT1G03610 unknown 0.434 -0.360
80 258591_at AT3G04360 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.434 0.073
81 248820_at AT5G47060 unknown 0.431 0.097
82 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.428 -0.164
83 257654_at AT3G13310 DJC66, DNA J protein C66 0.428 -0.286
84 266393_at AT2G41260 ATM17, M17 -1.762 0.005
85 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -1.611 -0.023
86 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -1.395 -0.044
87 256814_at AT3G21370 BGLU19, beta glucosidase 19 -1.269 -0.060
88 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -1.220 -0.008
89 264612_at AT1G04560 [AWPM-19-like family protein] -1.081 0.072
90 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -1.070 -0.090
91 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -1.068 -0.011
92 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -1.049 0.011
93 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -1.046 -0.087
94 250468_at AT5G10120 [Ethylene insensitive 3 family protein] -1.037 -0.064
95 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -1.014 0.498
96 251838_at AT3G54940 [Papain family cysteine protease] -0.912 -0.013
97 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.857 -0.013
98 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.853 -0.058
99 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.848 0.080
100 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.826 0.043
101 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.822 0.036
102 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.796 -0.186
103 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 -0.784 -0.121
104 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.766 0.034
105 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.735 0.293
106 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.726 -0.113
107 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.711 0.008
108 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.708 0.030
109 258327_at AT3G22640 PAP85 -0.698 -0.081
110 259615_at AT1G47980 unknown -0.685 -0.030
111 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.681 -0.084
112 258489_at AT3G02520 GF14 NU, GRF7, general regulatory factor 7 -0.678 0.110
113 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.640 -0.096
114 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] -0.588 0.130
115 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.586 -0.249
116 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 -0.572 -0.208
117 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.563 0.295
118 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.561 -0.088
119 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.552 -0.146
120 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.552 0.095
121 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.547 0.266
122 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.547 -0.126
123 255648_at AT4G00910 [Aluminium activated malate transporter family protein] -0.534 0.001
124 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.529 0.048
125 259578_at AT1G27990 unknown -0.529 -0.003
126 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.523 -0.114
127 254155_at AT4G24480 [Protein kinase superfamily protein] -0.517 0.006
128 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.515 -0.133
129 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.505 0.010
130 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.503 -0.315
131 255763_at AT1G16730 unknown -0.490 -0.043
132 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.483 0.341
133 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.478 0.192
134 265962_at AT2G37460 UMAMIT12, Usually multiple acids move in and out Transporters 12 -0.469 -0.247
135 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c -0.466 0.003
136 259314_at AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] -0.461 -0.062
137 261247_at AT1G20070 unknown -0.443 0.082
138 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 -0.440 -0.290
139 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.436 -0.023
140 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 -0.433 0.317
141 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 -0.431 0.308
142 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.428 -0.020
143 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.426 0.195
144 247672_at AT5G60220 TET4, tetraspanin4 -0.421 0.002
145 253044_at AT4G37290 unknown -0.414 1.002
146 255877_at AT2G40460 [Major facilitator superfamily protein] -0.411 -0.249
147 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.407 0.302
148 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.402 -0.101
149 264537_at AT1G55610 BRL1, BRI1 like -0.399 0.645
150 262396_at AT1G49470 unknown -0.399 -0.210
151 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.389 0.015
152 266222_at AT2G28780 unknown -0.381 -0.617
153 249042_at AT5G44350 [ethylene-responsive nuclear protein -related] -0.379 -0.389
154 252594_at AT3G45680 [Major facilitator superfamily protein] -0.377 -0.175
155 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.377 -0.014
156 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 -0.376 -0.019
157 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.375 -0.651
158 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.371 -0.349
159 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.368 0.213
160 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.366 0.340
161 245082_at AT2G23270 unknown -0.354 -0.326
162 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.352 -0.040
163 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.350 0.064
164 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.343 -0.198
165 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.333 0.389