4.0:Information of module
MPK6 ox Root Hypoxia
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0036293 response to decreased oxygen levels BP 2.633e-19
GO:0070482 response to oxygen levels BP 4.710e-19
GO:0001666 response to hypoxia BP 8.097e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010431 seed maturation BP 9.794e-08
GO:0001101 response to acid chemical BP 1.266e-07
GO:0009725 response to hormone BP 1.362e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
MPK6 ox Root Hypoxia		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 250464_at AT5G10040 unknown 1.742 -0.738
2 255807_at AT4G10270 [Wound-responsive family protein] 1.586 0.558
3 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 1.458 1.351
4 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] 1.381 0.757
5 253298_at AT4G33560 [Wound-responsive family protein] 1.283 0.411
6 259879_at AT1G76650 CML38, calmodulin-like 38 1.231 0.043
7 245226_at AT3G29970 [B12D protein] 1.214 0.651
8 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 1.208 1.278
9 247431_at AT5G62520 SRO5, similar to RCD one 5 1.205 1.081
10 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.183 0.233
11 257925_at AT3G23170 unknown 1.143 1.028
12 252746_at AT3G43190 ATSUS4, ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, SUS4, sucrose synthase 4 1.125 0.468
13 254200_at AT4G24110 unknown 1.104 -0.184
14 253060_at AT4G37710 [VQ motif-containing protein] 1.080 -1.482
15 253616_at AT4G30380 [Barwin-related endoglucanase] 1.060 -0.829
16 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 1.035 0.231
17 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 1.033 0.466
18 249384_at AT5G39890 unknown 0.985 0.751
19 250152_at AT5G15120 unknown 0.957 0.246
20 255568_at AT4G01250 AtWRKY22, WRKY22 0.891 0.135
21 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.889 0.527
22 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.865 0.752
23 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.859 0.950
24 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.814 -0.681
25 253301_at AT4G33720 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.806 -1.022
26 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 0.800 1.428
27 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.796 0.672
28 266998_at AT2G34400 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.790 -0.533
29 259921_at AT1G72540 [Protein kinase superfamily protein] 0.783 -0.679
30 253573_at AT4G31020 [alpha/beta-Hydrolases superfamily protein] 0.759 -0.412
31 245998_at AT5G20830 ASUS1, atsus1, SUS1, sucrose synthase 1 0.731 -0.445
32 246200_at AT4G37240 unknown 0.723 0.440
33 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.718 -0.879
34 253404_at AT4G32840 PFK6, phosphofructokinase 6 0.716 1.181
35 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.713 1.015
36 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.706 0.176
37 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.664 0.827
38 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.657 -0.759
39 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.644 0.085
40 258991_at AT3G08820 [Pentatricopeptide repeat (PPR) superfamily protein] 0.622 -0.963
41 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.617 0.160
42 255532_at AT4G02170 unknown 0.602 -0.314
43 248160_at AT5G54470 BBX29, B-box domain protein 29 0.598 0.478
44 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.592 0.248
45 245401_at AT4G17670 unknown 0.590 0.414
46 245586_at AT4G14980 [Cysteine/Histidine-rich C1 domain family protein] 0.586 0.349
47 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.585 -0.206
48 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.580 -0.277
49 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 0.575 -0.193
50 255883_at AT1G20270 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.574 0.388
51 257922_at AT3G23150 ETR2, ethylene response 2 0.573 0.895
52 262741_at AT1G28760 [Uncharacterized conserved protein (DUF2215)] 0.572 0.154
53 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.567 1.195
54 256262_at AT3G12150 unknown 0.565 -0.745
55 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.565 -0.520
56 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.555 -0.581
57 262392_at AT1G49520 [SWIB complex BAF60b domain-containing protein] 0.554 -0.382
58 266800_at AT2G22880 [VQ motif-containing protein] 0.552 0.365
59 264648_at AT1G09080 BIP3, binding protein 3 0.535 -1.619
60 264788_at AT2G17880 DJC24, DNA J protein C24 0.535 -0.541
61 253987_at AT4G26270 PFK3, phosphofructokinase 3 0.535 0.324
62 247024_at AT5G66985 unknown 0.532 1.281
63 245324_at AT4G17260 [Lactate/malate dehydrogenase family protein] 0.500 0.049
64 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.498 1.198
65 259996_at AT1G67910 unknown 0.496 0.185
66 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.492 0.081
67 257466_at AT1G62840 unknown 0.490 -0.748
68 267230_at AT2G44080 ARL, ARGOS-like 0.484 0.620
69 249234_at AT5G42200 [RING/U-box superfamily protein] 0.481 -0.452
70 264647_at AT1G09090 ATRBOHB, respiratory burst oxidase homolog B, ATRBOHB-BETA, RBOHB, respiratory burst oxidase homolog B 0.480 -1.068
71 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.473 0.416
72 260005_at AT1G67920 unknown 0.458 0.016
73 266220_at AT2G28755 [UDP-D-glucuronate carboxy-lyase-related] 0.454 -0.004
74 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.451 0.143
75 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.450 -0.657
76 246158_at AT5G19855 AtRbcX2, RbcX2, homologue of cyanobacterial RbcX 2 0.446 -0.090
77 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE 0.440 -0.887
78 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.438 -0.407
79 264836_at AT1G03610 unknown 0.434 0.616
80 258591_at AT3G04360 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.434 -1.282
81 248820_at AT5G47060 unknown 0.431 1.235
82 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.428 -0.819
83 257654_at AT3G13310 DJC66, DNA J protein C66 0.428 0.589
84 266393_at AT2G41260 ATM17, M17 -1.762 -0.905
85 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 -1.611 0.794
86 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 -1.395 0.040
87 256814_at AT3G21370 BGLU19, beta glucosidase 19 -1.269 -0.778
88 264079_at AT2G28490 [RmlC-like cupins superfamily protein] -1.220 0.611
89 264612_at AT1G04560 [AWPM-19-like family protein] -1.081 0.856
90 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -1.070 0.043
91 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -1.068 -0.014
92 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 -1.049 0.193
93 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -1.046 0.587
94 250468_at AT5G10120 [Ethylene insensitive 3 family protein] -1.037 -0.003
95 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -1.014 1.076
96 251838_at AT3G54940 [Papain family cysteine protease] -0.912 0.822
97 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] -0.857 -0.278
98 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 -0.853 0.178
99 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.848 1.317
100 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] -0.826 -0.515
101 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] -0.822 0.431
102 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 -0.796 0.946
103 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 -0.784 0.252
104 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.766 -0.928
105 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.735 -0.282
106 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.726 -0.196
107 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.711 0.536
108 266143_at AT2G38905 [Low temperature and salt responsive protein family] -0.708 1.065
109 258327_at AT3G22640 PAP85 -0.698 0.732
110 259615_at AT1G47980 unknown -0.685 -0.793
111 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 -0.681 -0.222
112 258489_at AT3G02520 GF14 NU, GRF7, general regulatory factor 7 -0.678 0.353
113 246273_at AT4G36700 [RmlC-like cupins superfamily protein] -0.640 -0.111
114 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] -0.588 -0.357
115 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.586 1.007
116 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 -0.572 -0.817
117 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.563 0.262
118 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.561 -0.211
119 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] -0.552 -0.501
120 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.552 0.262
121 263376_at AT2G20520 FLA6, FASCICLIN-like arabinogalactan 6 -0.547 -0.920
122 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.547 -0.384
123 255648_at AT4G00910 [Aluminium activated malate transporter family protein] -0.534 0.145
124 260753_at AT1G49230 AtATL78, ATL78, Arabidopsis T?xicos en Levadura 78 -0.529 -0.856
125 259578_at AT1G27990 unknown -0.529 -0.501
126 249417_at AT5G39670 [Calcium-binding EF-hand family protein] -0.523 -0.007
127 254155_at AT4G24480 [Protein kinase superfamily protein] -0.517 -0.372
128 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.515 0.163
129 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein -0.505 -0.329
130 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.503 0.799
131 255763_at AT1G16730 unknown -0.490 -0.561
132 252417_at AT3G47480 [Calcium-binding EF-hand family protein] -0.483 0.062
133 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.478 0.247
134 265962_at AT2G37460 UMAMIT12, Usually multiple acids move in and out Transporters 12 -0.469 0.435
135 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c -0.466 0.038
136 259314_at AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] -0.461 -1.094
137 261247_at AT1G20070 unknown -0.443 -0.094
138 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 -0.440 -0.366
139 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.436 0.928
140 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 -0.433 0.811
141 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 -0.431 -0.061
142 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.428 -0.271
143 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.426 -0.367
144 247672_at AT5G60220 TET4, tetraspanin4 -0.421 -0.661
145 253044_at AT4G37290 unknown -0.414 -0.520
146 255877_at AT2G40460 [Major facilitator superfamily protein] -0.411 -0.617
147 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.407 -0.533
148 249765_at AT5G24030 SLAH3, SLAC1 homologue 3 -0.402 -0.645
149 264537_at AT1G55610 BRL1, BRI1 like -0.399 -0.764
150 262396_at AT1G49470 unknown -0.399 1.325
151 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] -0.389 0.054
152 266222_at AT2G28780 unknown -0.381 -0.244
153 249042_at AT5G44350 [ethylene-responsive nuclear protein -related] -0.379 0.303
154 252594_at AT3G45680 [Major facilitator superfamily protein] -0.377 -0.407
155 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.377 0.059
156 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 -0.376 0.796
157 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.375 -0.742
158 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.371 -0.629
159 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.368 -0.791
160 247768_at AT5G58900 [Homeodomain-like transcriptional regulator] -0.366 0.727
161 245082_at AT2G23270 unknown -0.354 -0.190
162 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 -0.352 -0.948
163 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.350 1.031
164 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.343 -0.412
165 251191_at AT3G62590 [alpha/beta-Hydrolases superfamily protein] -0.333 -0.297