4.0:Information of module
F1 whole seedlings root
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901698 response to nitrogen compound BP 7.049e-05
GO:0009753 response to jasmonic acid BP 3.102e-04
GO:0071396 cellular response to lipid BP 1.120e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010048 vernalization response BP 2.980e-04
GO:0007167 enzyme linked receptor protein signaling... BP 1.912e-03
GO:0007169 transmembrane receptor protein tyrosine ... BP 1.912e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
F1 whole seedlings root		 Log2 signal ratio
bri1-116
1 253707_at AT4G29200 [Beta-galactosidase related protein] 1.358 0.033
2 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 1.104 -0.183
3 265063_at AT1G61500 [S-locus lectin protein kinase family protein] 0.772 0.104
4 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.699 -0.268
5 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.633 0.128
6 250135_at AT5G15360 unknown 0.633 -0.063
7 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 0.591 -0.014
8 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY 0.549 0.047
9 262421_at AT1G50290 unknown 0.537 0.034
10 257673_at AT3G20370 [TRAF-like family protein] 0.534 -0.231
11 266275_at AT2G29370 [NAD(P)-binding Rossmann-fold superfamily protein] 0.450 -0.098
12 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 0.449 -0.189
13 249645_at AT5G36910 THI2.2, thionin 2.2 0.431 0.034
14 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.429 0.065
15 246855_at AT5G26280 [TRAF-like family protein] 0.382 -0.060
16 246857_at AT5G25920 unknown 0.371 0.001
17 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] 0.338 0.135
18 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.322 -0.056
19 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.320 -0.014
20 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.319 0.005
21 247240_at AT5G64660 ATCMPG2, CMPG2, CYS, MET, PRO, and GLY protein 2 0.315 -0.188
22 251304_at AT3G61990 OMTF3, O-MTase family 3 protein 0.313 -0.209
23 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.312 0.111
24 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.309 -0.295
25 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.305 0.155
26 258028_at AT3G27473 [Cysteine/Histidine-rich C1 domain family protein] 0.294 -0.007
27 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.291 -0.133
28 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.283 0.024
29 248835_at AT5G47250 [LRR and NB-ARC domains-containing disease resistance protein] 0.282 0.003
30 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.279 0.554
31 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.279 -0.287
32 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.271 -0.020
33 259327_at AT3G16460 JAL34, jacalin-related lectin 34 0.270 -0.097
34 261586_at AT1G01640 [BTB/POZ domain-containing protein] 0.265 0.084
35 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.258 -0.114
36 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.258 -0.275
37 256527_at AT1G66100 [Plant thionin] 0.253 0.050
38 245532_at AT4G15110 CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3 0.251 0.206
39 258013_at AT3G19320 [Leucine-rich repeat (LRR) family protein] 0.245 0.122
40 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.243 0.025
41 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.237 0.778
42 253689_at AT4G29770 unknown 0.233 0.031
43 248991_at AT5G45220 [Disease resistance protein (TIR-NBS-LRR class) family] 0.233 0.079
44 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.232 -0.122
45 252502_at AT3G46900 COPT2, copper transporter 2 0.227 -0.017
46 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.620 0.327
47 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.551 0.063
48 260012_at AT1G67865 unknown -0.449 0.331
49 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.342 0.014
50 260948_at AT1G06100 [Fatty acid desaturase family protein] -0.331 0.043
51 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.317 0.157
52 251560_at AT3G57920 SPL15, squamosa promoter binding protein-like 15 -0.304 0.019
53 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.289 -0.010
54 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.270 0.159
55 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.254 0.014
56 248847_at AT5G46510 VICTL, VARIATION IN COMPOUND TRIGGERED ROOT growth response-like -0.248 0.082
57 265831_at AT2G14460 unknown -0.245 0.203
58 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.243 0.071
59 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.239 0.053
60 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.236 -0.115
61 264958_at AT1G76960 unknown -0.212 -0.215
62 246079_at AT5G20450 unknown -0.211 0.102
63 254585_at AT4G19500 [nucleoside-triphosphatases] -0.203 0.135
64 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -0.202 0.121
65 249904_at AT5G22700 [F-box/RNI-like/FBD-like domains-containing protein] -0.201 0.199
66 259142_at AT3G10200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.200 0.068
67 260166_at AT1G79840 GL2, GLABRA 2 -0.193 -0.060
68 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.189 -0.038
69 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.185 0.075
70 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.184 0.134
71 253800_at AT4G28160 [hydroxyproline-rich glycoprotein family protein] -0.172 0.114
72 263521_at AT2G24960 unknown -0.170 0.044
73 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 -0.168 0.036
74 248079_at AT5G55790 unknown -0.166 0.154
75 256384_at AT1G66660 [Protein with RING/U-box and TRAF-like domains] -0.166 0.104
76 254130_at AT4G24540 AGL24, AGAMOUS-like 24 -0.164 0.032
77 248556_at AT5G50350 unknown -0.163 -0.126
78 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] -0.159 0.134
79 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.159 -0.079
80 251591_at AT3G57680 [Peptidase S41 family protein] -0.156 -0.010
81 252485_at AT3G46530 RPP13, RECOGNITION OF PERONOSPORA PARASITICA 13 -0.156 0.213
82 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.155 0.161
83 254561_at AT4G19160 unknown -0.153 0.069
84 251577_at AT3G58350 RTM3, RESTRICTED TEV MOVEMENT 3 -0.153 -0.099
85 257013_at AT3G26922 [F-box/RNI-like superfamily protein] -0.152 0.158
86 248944_at AT5G45500 [RNI-like superfamily protein] -0.149 -0.024
87 260719_at AT1G48090 [calcium-dependent lipid-binding family protein] -0.148 0.137
88 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.146 0.027
89 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.144 -0.511