4.0:Information of module
F1 whole seedlings root
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901698 response to nitrogen compound BP 7.049e-05
GO:0009753 response to jasmonic acid BP 3.102e-04
GO:0071396 cellular response to lipid BP 1.120e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010048 vernalization response BP 2.980e-04
GO:0007167 enzyme linked receptor protein signaling... BP 1.912e-03
GO:0007169 transmembrane receptor protein tyrosine ... BP 1.912e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
F1 whole seedlings root		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 253707_at AT4G29200 [Beta-galactosidase related protein] 1.358 0.146
2 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 1.104 -0.196
3 265063_at AT1G61500 [S-locus lectin protein kinase family protein] 0.772 0.181
4 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.699 0.509
5 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.633 -0.206
6 250135_at AT5G15360 unknown 0.633 -0.502
7 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 0.591 -0.703
8 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY 0.549 0.053
9 262421_at AT1G50290 unknown 0.537 0.230
10 257673_at AT3G20370 [TRAF-like family protein] 0.534 0.827
11 266275_at AT2G29370 [NAD(P)-binding Rossmann-fold superfamily protein] 0.450 -0.666
12 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 0.449 -0.230
13 249645_at AT5G36910 THI2.2, thionin 2.2 0.431 0.273
14 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.429 -0.352
15 246855_at AT5G26280 [TRAF-like family protein] 0.382 0.195
16 246857_at AT5G25920 unknown 0.371 -0.681
17 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] 0.338 -0.775
18 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.322 -0.742
19 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.320 1.077
20 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.319 0.238
21 247240_at AT5G64660 ATCMPG2, CMPG2, CYS, MET, PRO, and GLY protein 2 0.315 -0.232
22 251304_at AT3G61990 OMTF3, O-MTase family 3 protein 0.313 1.072
23 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.312 -0.711
24 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] 0.309 -0.083
25 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.305 -0.572
26 258028_at AT3G27473 [Cysteine/Histidine-rich C1 domain family protein] 0.294 -1.768
27 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.291 -0.326
28 249843_at AT5G23570 ATSGS3, SUPPRESSOR OF GENE SILENCING 3, SGS3, SUPPRESSOR OF GENE SILENCING 3 0.283 0.214
29 248835_at AT5G47250 [LRR and NB-ARC domains-containing disease resistance protein] 0.282 -0.363
30 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.279 0.725
31 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.279 -0.268
32 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.271 0.747
33 259327_at AT3G16460 JAL34, jacalin-related lectin 34 0.270 0.820
34 261586_at AT1G01640 [BTB/POZ domain-containing protein] 0.265 -0.191
35 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 0.258 0.423
36 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.258 -0.144
37 256527_at AT1G66100 [Plant thionin] 0.253 -1.454
38 245532_at AT4G15110 CYP97B3, cytochrome P450, family 97, subfamily B, polypeptide 3 0.251 1.079
39 258013_at AT3G19320 [Leucine-rich repeat (LRR) family protein] 0.245 -1.039
40 249166_at AT5G42840 [Cysteine/Histidine-rich C1 domain family protein] 0.243 -0.246
41 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.237 -0.523
42 253689_at AT4G29770 unknown 0.233 -1.506
43 248991_at AT5G45220 [Disease resistance protein (TIR-NBS-LRR class) family] 0.233 -0.977
44 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.232 -1.057
45 252502_at AT3G46900 COPT2, copper transporter 2 0.227 -0.880
46 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.620 -0.537
47 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 -0.551 -0.062
48 260012_at AT1G67865 unknown -0.449 -1.064
49 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.342 0.195
50 260948_at AT1G06100 [Fatty acid desaturase family protein] -0.331 -0.798
51 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.317 -0.614
52 251560_at AT3G57920 SPL15, squamosa promoter binding protein-like 15 -0.304 -0.109
53 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.289 0.439
54 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.270 -0.694
55 255181_at AT4G08110 [CACTA-like transposase family (Ptta/En/Spm), has a 4.2e-66 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] -0.254 -0.374
56 248847_at AT5G46510 VICTL, VARIATION IN COMPOUND TRIGGERED ROOT growth response-like -0.248 -0.263
57 265831_at AT2G14460 unknown -0.245 0.822
58 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.243 0.545
59 265302_at AT2G13970 [Mutator-like transposase family, has a 4.1e-39 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.239 -0.476
60 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.236 -0.865
61 264958_at AT1G76960 unknown -0.212 -0.727
62 246079_at AT5G20450 unknown -0.211 -0.833
63 254585_at AT4G19500 [nucleoside-triphosphatases] -0.203 -0.131
64 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -0.202 -0.162
65 249904_at AT5G22700 [F-box/RNI-like/FBD-like domains-containing protein] -0.201 -0.073
66 259142_at AT3G10200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.200 0.016
67 260166_at AT1G79840 GL2, GLABRA 2 -0.193 0.841
68 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.189 0.639
69 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.185 0.457
70 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.184 0.240
71 253800_at AT4G28160 [hydroxyproline-rich glycoprotein family protein] -0.172 -0.631
72 263521_at AT2G24960 unknown -0.170 0.153
73 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 -0.168 -0.178
74 248079_at AT5G55790 unknown -0.166 0.132
75 256384_at AT1G66660 [Protein with RING/U-box and TRAF-like domains] -0.166 -0.190
76 254130_at AT4G24540 AGL24, AGAMOUS-like 24 -0.164 -0.838
77 248556_at AT5G50350 unknown -0.163 -0.330
78 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] -0.159 -0.027
79 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.159 -0.793
80 251591_at AT3G57680 [Peptidase S41 family protein] -0.156 0.527
81 252485_at AT3G46530 RPP13, RECOGNITION OF PERONOSPORA PARASITICA 13 -0.156 -1.023
82 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.155 1.068
83 254561_at AT4G19160 unknown -0.153 1.037
84 251577_at AT3G58350 RTM3, RESTRICTED TEV MOVEMENT 3 -0.153 -0.823
85 257013_at AT3G26922 [F-box/RNI-like superfamily protein] -0.152 0.340
86 248944_at AT5G45500 [RNI-like superfamily protein] -0.149 0.733
87 260719_at AT1G48090 [calcium-dependent lipid-binding family protein] -0.148 0.238
88 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.146 1.061
89 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.144 0.195