4.0:Information of module
ice1 6H Cold
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.427e-07
GO:0010033 response to organic substance BP 1.302e-06
GO:0006865 amino acid transport BP 1.432e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.007e-08
GO:0009658 chloroplast organization BP 2.458e-08
GO:0009668 plastid membrane organization BP 1.376e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ice1 6H Cold		 Log2 signal ratio
Dark 3day ivd
1 266292_at AT2G29350 SAG13, senescence-associated gene 13 1.245 1.152
2 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 1.127 0.951
3 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.074 5.692
4 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.989 -1.166
5 260556_at AT2G43620 [Chitinase family protein] 0.981 0.736
6 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.973 -2.017
7 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.963 0.726
8 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.952 3.351
9 252511_at AT3G46280 [protein kinase-related] 0.936 2.359
10 264635_at AT1G65500 unknown 0.936 -0.326
11 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.928 1.619
12 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 0.784 4.838
13 250365_at AT5G11410 [Protein kinase superfamily protein] 0.782 -3.113
14 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.765 3.348
15 265660_at AT2G25470 AtRLP21, receptor like protein 21, RLP21, receptor like protein 21 0.757 -1.753
16 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.718 2.754
17 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.718 -2.748
18 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.707 0.119
19 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 3.706
20 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.661 -0.042
21 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.640 -3.633
22 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.639 -0.385
23 248889_at AT5G46230 unknown 0.626 0.073
24 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.625 3.959
25 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 0.611 2.574
26 252170_at AT3G50480 HR4, homolog of RPW8 4 0.608 1.880
27 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.607 -0.693
28 260438_at AT1G68290 ENDO2, endonuclease 2 0.592 1.155
29 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.590 -2.275
30 248496_at AT5G50790 AtSWEET10, SWEET10 0.588 0.457
31 247358_at AT5G63580 ATFLS2, FLS2, flavonol synthase 2 0.577 -2.844
32 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.572 2.216
33 252611_at AT3G45130 LAS1, lanosterol synthase 1 0.567 2.698
34 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.564 7.215
35 245052_at AT2G26440 PME12, pectin methylesterase 12 0.555 -3.593
36 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.533 6.851
37 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.532 3.890
38 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.518 -0.005
39 264717_at AT1G70140 ATFH8, formin 8, FH8, formin 8 0.482 1.994
40 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.481 1.840
41 252989_at AT4G38420 sks9, SKU5 similar 9 0.481 -0.724
42 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.478 4.052
43 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.475 -0.630
44 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.475 -2.989
45 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.464 3.505
46 247424_at AT5G62850 AtSWEET5, AtVEX1, VEGETATIVE CELL EXPRESSED1, SWEET5 0.463 -4.615
47 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.446 0.513
48 246943_at AT5G25440 [Protein kinase superfamily protein] 0.441 -0.532
49 266993_at AT2G39210 [Major facilitator superfamily protein] 0.434 -0.579
50 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.432 -3.018
51 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.423 0.476
52 260633_at AT1G62400 HT1, high leaf temperature 1 0.418 0.214
53 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.416 -1.749
54 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.400 3.402
55 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.393 -3.438
56 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 0.386 -2.929
57 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.384 6.033
58 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.376 -1.334
59 266800_at AT2G22880 [VQ motif-containing protein] 0.375 4.138
60 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.373 -2.909
61 258323_at AT3G22750 [Protein kinase superfamily protein] 0.364 2.188
62 261401_at AT1G79640 [Protein kinase superfamily protein] 0.363 0.914
63 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 0.355 -3.021
64 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.354 -1.028
65 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.351 0.716
66 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.345 1.516
67 254494_at AT4G20050 QRT3, QUARTET 3 0.343 -0.129
68 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.955 -7.079
69 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.739 1.000
70 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.722 -1.460
71 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.701 -4.622
72 247878_at AT5G57760 unknown -0.698 -5.679
73 252215_at AT3G50240 KICP-02 -0.696 -1.764
74 249813_at AT5G23940 DCR, DEFECTIVE IN CUTICULAR RIDGES, EMB3009, EMBRYO DEFECTIVE 3009, PEL3, PERMEABLE LEAVES3 -0.688 0.289
75 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.685 -6.959
76 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.669 -4.567
77 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.665 -6.173
78 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.664 -5.523
79 250936_at AT5G03120 unknown -0.662 -3.481
80 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.627 -0.438
81 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.612 -2.987
82 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.605 -1.594
83 255825_at AT2G40475 ASG8, ALTERED SEED GERMINATION 8 -0.602 -5.885
84 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.601 -1.231
85 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.504 -6.569
86 258367_at AT3G14370 WAG2 -0.494 -0.989
87 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.493 -3.402
88 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.491 -3.165
89 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.484 -1.905
90 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.458 -0.071
91 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.451 -1.155
92 262508_at AT1G11300 [protein serine/threonine kinases] -0.444 -3.020
93 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.436 -0.020
94 257769_at AT3G23050 AXR2, AUXIN RESISTANT 2, IAA7, indole-3-acetic acid 7 -0.428 -0.926
95 250045_at AT5G17700 [MATE efflux family protein] -0.426 -1.771
96 251353_at AT3G61080 [Protein kinase superfamily protein] -0.416 -1.146
97 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.414 0.033
98 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.410 -5.386
99 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.398 -4.713
100 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.395 -2.197
101 255028_at AT4G09890 unknown -0.389 -2.883
102 248040_at AT5G55970 [RING/U-box superfamily protein] -0.387 3.572
103 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.383 -0.301
104 251759_at AT3G55630 ATDFD, DHFS-FPGS homolog D, DFD, DHFS-FPGS homolog D, FPGS3, folylpolyglutamate synthetase 3 -0.383 -3.772
105 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.382 -1.029
106 250284_at AT5G13290 CRN, CORYNE, SOL2, SUPPRESSOR OF LLP1 2 -0.374 -0.926
107 245078_at AT2G23340 DEAR3, DREB and EAR motif protein 3 -0.373 0.895
108 260696_at AT1G32520 unknown -0.372 -1.997
109 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 -0.370 -3.549
110 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.363 0.007
111 251720_at AT3G56160 [Sodium Bile acid symporter family] -0.358 -5.559
112 251036_at AT5G02160 unknown -0.349 1.058
113 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.348 -0.071
114 265726_at AT2G32010 CVL1, CVP2 like 1 -0.342 -3.426
115 266335_at AT2G32440 ATKAO2, ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, CYP88A4, KAO2, ent-kaurenoic acid hydroxylase 2 -0.336 -0.909
116 259287_at AT3G11490 [rac GTPase activating protein] -0.334 -1.486
117 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.327 -0.071
118 256035_at AT1G07140 SIRANBP -0.326 0.169
119 262105_at AT1G02810 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.323 -1.532
120 251701_at AT3G56650 PPD6, PsbP-domain protein 6 -0.323 -3.718
121 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 -0.322 -0.151
122 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.319 4.508
123 248423_at AT5G51670 unknown -0.318 -2.393
124 263495_at AT2G42530 COR15B, cold regulated 15b -0.314 -0.285
125 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.308 -4.188
126 252863_at AT4G39800 ATIPS1, INOSITOL 3-PHOSPHATE SYNTHASE 1, ATMIPS1, MYO-INOSITOL-1-PHOSPHATE SYNTHASE 1, MI-1-P SYNTHASE, MIPS1, D-myo-Inositol 3-Phosphate Synthase 1, MIPS1, myo-inositol-1-phosphate synthase 1 -0.308 -5.016
127 261536_at AT1G01790 ATKEA1, K+ EFFLUX ANTIPORTER 1, KEA1, K+ efflux antiporter 1 -0.306 -3.390
128 266481_at AT2G31070 TCP10, TCP domain protein 10 -0.303 -1.174
129 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.300 -0.368
130 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.297 -2.719
131 257026_at AT3G19200 unknown -0.296 -0.989
132 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 -0.282 -1.111
133 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 -0.281 -4.787
134 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] -0.272 -1.849