4.0:Information of module
ice1 6H Cold
In comparison with root endodermis and quiescent center pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.427e-07
GO:0010033 response to organic substance BP 1.302e-06
GO:0006865 amino acid transport BP 1.432e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.007e-08
GO:0009658 chloroplast organization BP 2.458e-08
GO:0009668 plastid membrane organization BP 1.376e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ice1 6H Cold		 Log2 signal ratio
root endodermis and quiescent center pH4.6
1 266292_at AT2G29350 SAG13, senescence-associated gene 13 1.245 -0.045
2 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 1.127 0.055
3 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.074 -0.091
4 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.989 -0.244
5 260556_at AT2G43620 [Chitinase family protein] 0.981 -0.014
6 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.973 -0.074
7 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.963 -0.041
8 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.952 -0.084
9 252511_at AT3G46280 [protein kinase-related] 0.936 -0.044
10 264635_at AT1G65500 unknown 0.936 -0.012
11 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.928 0.069
12 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 0.784 0.044
13 250365_at AT5G11410 [Protein kinase superfamily protein] 0.782 0.035
14 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.765 0.081
15 265660_at AT2G25470 AtRLP21, receptor like protein 21, RLP21, receptor like protein 21 0.757 -0.053
16 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.718 0.101
17 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.718 0.049
18 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.707 0.011
19 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 -0.031
20 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.661 0.030
21 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.640 -0.100
22 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.639 0.168
23 248889_at AT5G46230 unknown 0.626 -0.247
24 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.625 -0.052
25 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 0.611 0.193
26 252170_at AT3G50480 HR4, homolog of RPW8 4 0.608 -0.008
27 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.607 0.008
28 260438_at AT1G68290 ENDO2, endonuclease 2 0.592 -0.009
29 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.590 0.021
30 248496_at AT5G50790 AtSWEET10, SWEET10 0.588 -0.047
31 247358_at AT5G63580 ATFLS2, FLS2, flavonol synthase 2 0.577 0.011
32 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.572 -0.124
33 252611_at AT3G45130 LAS1, lanosterol synthase 1 0.567 -0.039
34 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.564 -0.008
35 245052_at AT2G26440 PME12, pectin methylesterase 12 0.555 0.262
36 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.533 -0.049
37 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.532 0.033
38 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.518 -0.114
39 264717_at AT1G70140 ATFH8, formin 8, FH8, formin 8 0.482 -0.078
40 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.481 -0.121
41 252989_at AT4G38420 sks9, SKU5 similar 9 0.481 0.719
42 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.478 0.026
43 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.475 -0.139
44 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.475 -0.061
45 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.464 0.029
46 247424_at AT5G62850 AtSWEET5, AtVEX1, VEGETATIVE CELL EXPRESSED1, SWEET5 0.463 -0.034
47 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.446 -0.034
48 246943_at AT5G25440 [Protein kinase superfamily protein] 0.441 0.094
49 266993_at AT2G39210 [Major facilitator superfamily protein] 0.434 0.088
50 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.432 0.014
51 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.423 0.017
52 260633_at AT1G62400 HT1, high leaf temperature 1 0.418 0.006
53 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.416 0.003
54 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.400 0.128
55 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.393 -0.014
56 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 0.386 -0.158
57 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.384 -0.102
58 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.376 -0.138
59 266800_at AT2G22880 [VQ motif-containing protein] 0.375 -0.027
60 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.373 -0.073
61 258323_at AT3G22750 [Protein kinase superfamily protein] 0.364 0.022
62 261401_at AT1G79640 [Protein kinase superfamily protein] 0.363 0.086
63 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 0.355 -0.197
64 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.354 -0.082
65 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.351 -0.085
66 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.345 -0.019
67 254494_at AT4G20050 QRT3, QUARTET 3 0.343 -0.156
68 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.955 0.156
69 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.739 -0.037
70 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.722 0.017
71 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.701 -0.057
72 247878_at AT5G57760 unknown -0.698 -0.005
73 252215_at AT3G50240 KICP-02 -0.696 0.120
74 249813_at AT5G23940 DCR, DEFECTIVE IN CUTICULAR RIDGES, EMB3009, EMBRYO DEFECTIVE 3009, PEL3, PERMEABLE LEAVES3 -0.688 -0.010
75 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.685 -0.125
76 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.669 -0.028
77 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.665 0.044
78 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.664 -0.034
79 250936_at AT5G03120 unknown -0.662 0.006
80 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.627 0.031
81 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.612 -0.049
82 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.605 0.008
83 255825_at AT2G40475 ASG8, ALTERED SEED GERMINATION 8 -0.602 -0.041
84 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.601 -0.004
85 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.504 -0.035
86 258367_at AT3G14370 WAG2 -0.494 -0.118
87 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.493 0.046
88 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.491 -0.025
89 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.484 -0.038
90 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.458 0.051
91 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.451 -0.164
92 262508_at AT1G11300 [protein serine/threonine kinases] -0.444 -0.077
93 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.436 -0.108
94 257769_at AT3G23050 AXR2, AUXIN RESISTANT 2, IAA7, indole-3-acetic acid 7 -0.428 -0.016
95 250045_at AT5G17700 [MATE efflux family protein] -0.426 -0.084
96 251353_at AT3G61080 [Protein kinase superfamily protein] -0.416 0.059
97 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.414 -0.006
98 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.410 -0.041
99 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.398 0.028
100 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.395 -0.411
101 255028_at AT4G09890 unknown -0.389 -0.214
102 248040_at AT5G55970 [RING/U-box superfamily protein] -0.387 -0.080
103 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.383 -0.023
104 251759_at AT3G55630 ATDFD, DHFS-FPGS homolog D, DFD, DHFS-FPGS homolog D, FPGS3, folylpolyglutamate synthetase 3 -0.383 0.206
105 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.382 -0.262
106 250284_at AT5G13290 CRN, CORYNE, SOL2, SUPPRESSOR OF LLP1 2 -0.374 -0.130
107 245078_at AT2G23340 DEAR3, DREB and EAR motif protein 3 -0.373 -0.140
108 260696_at AT1G32520 unknown -0.372 0.254
109 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 -0.370 0.021
110 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.363 0.064
111 251720_at AT3G56160 [Sodium Bile acid symporter family] -0.358 0.023
112 251036_at AT5G02160 unknown -0.349 0.018
113 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.348 0.061
114 265726_at AT2G32010 CVL1, CVP2 like 1 -0.342 -0.042
115 266335_at AT2G32440 ATKAO2, ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, CYP88A4, KAO2, ent-kaurenoic acid hydroxylase 2 -0.336 0.177
116 259287_at AT3G11490 [rac GTPase activating protein] -0.334 -0.119
117 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.327 -0.038
118 256035_at AT1G07140 SIRANBP -0.326 -0.021
119 262105_at AT1G02810 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.323 -0.088
120 251701_at AT3G56650 PPD6, PsbP-domain protein 6 -0.323 -0.098
121 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 -0.322 -0.030
122 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.319 0.043
123 248423_at AT5G51670 unknown -0.318 -0.201
124 263495_at AT2G42530 COR15B, cold regulated 15b -0.314 -0.023
125 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.308 -0.165
126 252863_at AT4G39800 ATIPS1, INOSITOL 3-PHOSPHATE SYNTHASE 1, ATMIPS1, MYO-INOSITOL-1-PHOSPHATE SYNTHASE 1, MI-1-P SYNTHASE, MIPS1, D-myo-Inositol 3-Phosphate Synthase 1, MIPS1, myo-inositol-1-phosphate synthase 1 -0.308 0.089
127 261536_at AT1G01790 ATKEA1, K+ EFFLUX ANTIPORTER 1, KEA1, K+ efflux antiporter 1 -0.306 -0.116
128 266481_at AT2G31070 TCP10, TCP domain protein 10 -0.303 -0.069
129 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.300 -0.097
130 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.297 -0.374
131 257026_at AT3G19200 unknown -0.296 0.010
132 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 -0.282 -0.075
133 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 -0.281 -0.140
134 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] -0.272 0.169