4.0:Information of module
ice1 6H Cold
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 5.427e-07
GO:0010033 response to organic substance BP 1.302e-06
GO:0006865 amino acid transport BP 1.432e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 1.007e-08
GO:0009658 chloroplast organization BP 2.458e-08
GO:0009668 plastid membrane organization BP 1.376e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ice1 6H Cold		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 266292_at AT2G29350 SAG13, senescence-associated gene 13 1.245 -0.105
2 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 1.127 -0.067
3 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 1.074 -0.122
4 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.989 -0.163
5 260556_at AT2G43620 [Chitinase family protein] 0.981 -0.283
6 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.973 0.058
7 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.963 -0.070
8 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.952 0.027
9 252511_at AT3G46280 [protein kinase-related] 0.936 -0.427
10 264635_at AT1G65500 unknown 0.936 -0.303
11 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.928 -0.456
12 252984_at AT4G37990 ATCAD8, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, CAD-B2, CINNAMYL-ALCOHOL DEHYDROGENASE B2, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-2, elicitor-activated gene 3-2 0.784 0.051
13 250365_at AT5G11410 [Protein kinase superfamily protein] 0.782 -0.209
14 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.765 -0.335
15 265660_at AT2G25470 AtRLP21, receptor like protein 21, RLP21, receptor like protein 21 0.757 -0.291
16 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 0.718 -0.028
17 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.718 -0.114
18 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.707 -0.314
19 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.678 -0.186
20 251054_at AT5G01540 LecRK-VI.2, L-type lectin receptor kinase-VI.2, LECRKA4.1, lectin receptor kinase a4.1 0.661 -0.287
21 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.640 -0.530
22 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.639 0.046
23 248889_at AT5G46230 unknown 0.626 -0.241
24 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.625 -0.237
25 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 0.611 -0.012
26 252170_at AT3G50480 HR4, homolog of RPW8 4 0.608 -0.242
27 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.607 -0.120
28 260438_at AT1G68290 ENDO2, endonuclease 2 0.592 -0.013
29 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.590 -0.169
30 248496_at AT5G50790 AtSWEET10, SWEET10 0.588 0.110
31 247358_at AT5G63580 ATFLS2, FLS2, flavonol synthase 2 0.577 0.037
32 254241_at AT4G23190 AT-RLK3, RECEPTOR LIKE PROTEIN KINASE 3, CRK11, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 0.572 -0.160
33 252611_at AT3G45130 LAS1, lanosterol synthase 1 0.567 -0.055
34 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.564 -0.199
35 245052_at AT2G26440 PME12, pectin methylesterase 12 0.555 -0.075
36 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.533 -0.431
37 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.532 -0.216
38 260546_at AT2G43520 ATTI2, trypsin inhibitor protein 2, TI2, trypsin inhibitor protein 2 0.518 -0.029
39 264717_at AT1G70140 ATFH8, formin 8, FH8, formin 8 0.482 -0.134
40 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.481 -0.239
41 252989_at AT4G38420 sks9, SKU5 similar 9 0.481 0.133
42 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.478 -0.099
43 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.475 0.056
44 256170_at AT1G51790 [Leucine-rich repeat protein kinase family protein] 0.475 -0.265
45 248227_at AT5G53820 [Late embryogenesis abundant protein (LEA) family protein] 0.464 -0.102
46 247424_at AT5G62850 AtSWEET5, AtVEX1, VEGETATIVE CELL EXPRESSED1, SWEET5 0.463 0.059
47 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.446 -0.151
48 246943_at AT5G25440 [Protein kinase superfamily protein] 0.441 -0.169
49 266993_at AT2G39210 [Major facilitator superfamily protein] 0.434 -0.213
50 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.432 0.088
51 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.423 0.053
52 260633_at AT1G62400 HT1, high leaf temperature 1 0.418 0.082
53 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.416 -0.060
54 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 0.400 0.211
55 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.393 -0.230
56 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 0.386 -0.143
57 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.384 0.069
58 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.376 -0.230
59 266800_at AT2G22880 [VQ motif-containing protein] 0.375 -0.275
60 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.373 -0.132
61 258323_at AT3G22750 [Protein kinase superfamily protein] 0.364 -0.050
62 261401_at AT1G79640 [Protein kinase superfamily protein] 0.363 0.038
63 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 0.355 0.063
64 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.354 -0.032
65 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.351 -0.040
66 258385_at AT3G15510 ANAC056, Arabidopsis NAC domain containing protein 56, ATNAC2, NAC domain containing protein 2, NAC2, NAC domain containing protein 2, NARS1, NAC-REGULATED SEED MORPHOLOGY 1 0.345 -0.047
67 254494_at AT4G20050 QRT3, QUARTET 3 0.343 0.069
68 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.955 0.097
69 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.739 0.055
70 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.722 0.060
71 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.701 0.080
72 247878_at AT5G57760 unknown -0.698 0.061
73 252215_at AT3G50240 KICP-02 -0.696 0.062
74 249813_at AT5G23940 DCR, DEFECTIVE IN CUTICULAR RIDGES, EMB3009, EMBRYO DEFECTIVE 3009, PEL3, PERMEABLE LEAVES3 -0.688 0.051
75 259185_at AT3G01550 ATPPT2, PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2, PPT2, phosphoenolpyruvate (pep)/phosphate translocator 2 -0.685 0.059
76 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.669 0.072
77 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 -0.665 0.111
78 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.664 0.125
79 250936_at AT5G03120 unknown -0.662 0.049
80 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.627 0.092
81 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.612 0.015
82 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.605 0.068
83 255825_at AT2G40475 ASG8, ALTERED SEED GERMINATION 8 -0.602 0.023
84 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.601 0.041
85 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.504 0.065
86 258367_at AT3G14370 WAG2 -0.494 0.084
87 254737_at AT4G13840 CER26, ECERIFERUM 26 -0.493 0.052
88 245336_at AT4G16515 CLEL 6, CLE-like 6, GLV1, GOLVEN 1, RGF6, root meristem growth factor 6 -0.491 0.085
89 260515_at AT1G51460 ABCG13, ATP-binding cassette G13 -0.484 -0.020
90 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.458 0.097
91 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.451 0.065
92 262508_at AT1G11300 [protein serine/threonine kinases] -0.444 0.046
93 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.436 0.101
94 257769_at AT3G23050 AXR2, AUXIN RESISTANT 2, IAA7, indole-3-acetic acid 7 -0.428 0.033
95 250045_at AT5G17700 [MATE efflux family protein] -0.426 0.042
96 251353_at AT3G61080 [Protein kinase superfamily protein] -0.416 0.039
97 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] -0.414 0.038
98 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.410 0.058
99 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.398 0.007
100 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.395 0.044
101 255028_at AT4G09890 unknown -0.389 -0.020
102 248040_at AT5G55970 [RING/U-box superfamily protein] -0.387 0.039
103 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.383 0.005
104 251759_at AT3G55630 ATDFD, DHFS-FPGS homolog D, DFD, DHFS-FPGS homolog D, FPGS3, folylpolyglutamate synthetase 3 -0.383 0.029
105 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.382 0.052
106 250284_at AT5G13290 CRN, CORYNE, SOL2, SUPPRESSOR OF LLP1 2 -0.374 0.023
107 245078_at AT2G23340 DEAR3, DREB and EAR motif protein 3 -0.373 -0.009
108 260696_at AT1G32520 unknown -0.372 0.027
109 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 -0.370 0.075
110 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.363 0.022
111 251720_at AT3G56160 [Sodium Bile acid symporter family] -0.358 0.087
112 251036_at AT5G02160 unknown -0.349 0.015
113 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.348 0.060
114 265726_at AT2G32010 CVL1, CVP2 like 1 -0.342 0.089
115 266335_at AT2G32440 ATKAO2, ARABIDOPSIS ENT-KAURENOIC ACID HYDROXYLASE 2, CYP88A4, KAO2, ent-kaurenoic acid hydroxylase 2 -0.336 0.028
116 259287_at AT3G11490 [rac GTPase activating protein] -0.334 0.029
117 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 -0.327 0.019
118 256035_at AT1G07140 SIRANBP -0.326 0.015
119 262105_at AT1G02810 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.323 0.052
120 251701_at AT3G56650 PPD6, PsbP-domain protein 6 -0.323 0.021
121 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 -0.322 0.074
122 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.319 0.024
123 248423_at AT5G51670 unknown -0.318 0.078
124 263495_at AT2G42530 COR15B, cold regulated 15b -0.314 0.029
125 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.308 -0.087
126 252863_at AT4G39800 ATIPS1, INOSITOL 3-PHOSPHATE SYNTHASE 1, ATMIPS1, MYO-INOSITOL-1-PHOSPHATE SYNTHASE 1, MI-1-P SYNTHASE, MIPS1, D-myo-Inositol 3-Phosphate Synthase 1, MIPS1, myo-inositol-1-phosphate synthase 1 -0.308 0.075
127 261536_at AT1G01790 ATKEA1, K+ EFFLUX ANTIPORTER 1, KEA1, K+ efflux antiporter 1 -0.306 0.043
128 266481_at AT2G31070 TCP10, TCP domain protein 10 -0.303 0.029
129 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.300 0.060
130 258675_at AT3G08770 LTP6, lipid transfer protein 6 -0.297 -0.019
131 257026_at AT3G19200 unknown -0.296 -0.014
132 265713_at AT2G03530 ATUPS2, ARABIDOPSIS THALIANA UREIDE PERMEASE 2, UPS2, ureide permease 2 -0.282 -0.062
133 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 -0.281 0.036
134 245784_at AT1G32190 [alpha/beta-Hydrolases superfamily protein] -0.272 -0.006