4.0:Information of module
WT 6H Cold
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 4.815e-22
GO:0010243 response to organonitrogen compound BP 8.985e-22
GO:1901698 response to nitrogen compound BP 8.756e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042023 DNA endoreduplication BP 5.941e-04
GO:0044786 cell cycle DNA replication BP 6.516e-04
GO:0051052 regulation of DNA metabolic process BP 1.514e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT 6H Cold		 Log2 signal ratio
root callus inducing medium 12 h
1 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 1.371 -0.696
2 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 1.349 -0.667
3 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 1.343 -0.832
4 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 1.324 -0.606
5 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.137 -0.726
6 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 1.010 -0.273
7 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 1.000 -0.468
8 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.982 -0.665
9 262452_at AT1G11210 unknown 0.888 -0.494
10 248389_at AT5G51990 CBF4, C-repeat-binding factor 4, DREB1D, DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 0.875 -0.188
11 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.862 -0.560
12 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.829 -0.176
13 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.824 -0.229
14 256114_at AT1G16850 unknown 0.820 -0.189
15 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.790 -0.248
16 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.789 -0.240
17 260264_at AT1G68500 unknown 0.788 0.242
18 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.766 -0.258
19 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.748 -0.181
20 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.741 -0.338
21 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.716 -0.341
22 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.679 -0.111
23 250098_at AT5G17350 unknown 0.666 -0.365
24 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.665 -0.334
25 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.659 -0.478
26 245251_at AT4G17615 ATCBL1, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, CBL1, calcineurin B-like protein 1, SCABP5, SOS3-LIKE CALCIUM BINDING PROTEIN 5 0.653 -0.244
27 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.649 -0.397
28 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.647 -0.370
29 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.607 -0.156
30 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.595 -0.265
31 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.587 0.065
32 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.580 -0.150
33 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.575 -0.178
34 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.550 -0.133
35 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.389 -0.094
36 262656_at AT1G14200 [RING/U-box superfamily protein] -0.370 -0.231
37 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.344 0.700
38 257571_at AT3G16870 GATA17, GATA transcription factor 17 -0.325 0.409
39 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.315 0.302
40 251321_at AT3G61460 BRH1, brassinosteroid-responsive RING-H2 -0.312 0.134
41 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.298 -0.117
42 247024_at AT5G66985 unknown -0.291 -0.393
43 248385_at AT5G51910 [TCP family transcription factor ] -0.254 0.050
44 250572_at AT5G08210 MIR834A, microRNA834A -0.233 0.071
45 267135_at AT2G23430 ICK1, KRP1, KIP-RELATED PROTEIN 1 -0.228 -0.005
46 249190_at AT5G42750 BKI1, BRI1 kinase inhibitor 1 -0.220 0.226
47 250844_at AT5G04470 SIM, SIAMESE -0.218 -0.044
48 248934_at AT5G46080 [Protein kinase superfamily protein] -0.214 -0.115
49 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.206 0.033
50 246012_at AT5G10650 [RING/U-box superfamily protein] -0.204 0.162
51 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.203 0.141
52 249138_at AT5G43070 WPP1, WPP domain protein 1 -0.200 0.161
53 255231_at AT4G05460 [RNI-like superfamily protein] -0.179 0.074
54 264166_at AT1G65370 [TRAF-like family protein] -0.177 -0.011
55 254096_at AT4G25150 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.172 0.004
56 262633_at AT1G06630 [F-box/RNI-like superfamily protein] -0.167 -0.039
57 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.161 0.254
58 248291_at AT5G53020 [Ribonuclease P protein subunit P38-related] -0.160 0.153
59 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 -0.152 0.314
60 254160_at AT4G24210 SLY1, SLEEPY1 -0.150 0.130
61 258581_at AT3G04160 unknown -0.146 0.069
62 249189_at AT5G42780 AtHB27, homeobox protein 27, HB27, homeobox protein 27, ZHD13, ZINC FINGER HOMEODOMAIN 13 -0.145 -0.034
63 258029_at AT3G27580 ATPK7, D6PKL3, D6 PROTEIN KINASE LIKE 3 -0.144 0.093
64 257209_at AT3G14920 [Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein] -0.143 0.190
65 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.141 0.151
66 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 -0.140 -0.047
67 246285_at AT4G36980 unknown -0.136 -0.065