4.0:Information of module
WT 6H Cold
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 4.815e-22
GO:0010243 response to organonitrogen compound BP 8.985e-22
GO:1901698 response to nitrogen compound BP 8.756e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042023 DNA endoreduplication BP 5.941e-04
GO:0044786 cell cycle DNA replication BP 6.516e-04
GO:0051052 regulation of DNA metabolic process BP 1.514e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT 6H Cold		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 1.371 0.404
2 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 1.349 0.081
3 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 1.343 0.574
4 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 1.324 0.278
5 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.137 1.100
6 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 1.010 0.158
7 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 1.000 0.287
8 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.982 0.101
9 262452_at AT1G11210 unknown 0.888 0.686
10 248389_at AT5G51990 CBF4, C-repeat-binding factor 4, DREB1D, DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 0.875 0.336
11 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.862 0.201
12 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.829 -0.051
13 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.824 0.475
14 256114_at AT1G16850 unknown 0.820 0.459
15 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.790 0.338
16 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.789 0.681
17 260264_at AT1G68500 unknown 0.788 0.786
18 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.766 0.147
19 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.748 0.541
20 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.741 0.495
21 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.716 0.363
22 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.679 0.241
23 250098_at AT5G17350 unknown 0.666 0.136
24 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.665 0.278
25 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.659 0.053
26 245251_at AT4G17615 ATCBL1, ARABIDOPSIS THALIANA CALCINEURIN B-LIKE PROTEIN, CBL1, calcineurin B-like protein 1, SCABP5, SOS3-LIKE CALCIUM BINDING PROTEIN 5 0.653 0.199
27 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.649 0.342
28 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.647 0.652
29 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.607 0.037
30 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.595 0.586
31 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.587 0.278
32 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.580 0.250
33 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.575 0.059
34 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.550 0.290
35 264037_at AT2G03750 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.389 0.148
36 262656_at AT1G14200 [RING/U-box superfamily protein] -0.370 0.118
37 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.344 -0.067
38 257571_at AT3G16870 GATA17, GATA transcription factor 17 -0.325 -0.177
39 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.315 0.420
40 251321_at AT3G61460 BRH1, brassinosteroid-responsive RING-H2 -0.312 0.126
41 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.298 -0.129
42 247024_at AT5G66985 unknown -0.291 0.013
43 248385_at AT5G51910 [TCP family transcription factor ] -0.254 0.203
44 250572_at AT5G08210 MIR834A, microRNA834A -0.233 0.210
45 267135_at AT2G23430 ICK1, KRP1, KIP-RELATED PROTEIN 1 -0.228 0.270
46 249190_at AT5G42750 BKI1, BRI1 kinase inhibitor 1 -0.220 0.025
47 250844_at AT5G04470 SIM, SIAMESE -0.218 -0.203
48 248934_at AT5G46080 [Protein kinase superfamily protein] -0.214 0.452
49 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.206 0.070
50 246012_at AT5G10650 [RING/U-box superfamily protein] -0.204 0.378
51 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.203 0.075
52 249138_at AT5G43070 WPP1, WPP domain protein 1 -0.200 -0.464
53 255231_at AT4G05460 [RNI-like superfamily protein] -0.179 0.075
54 264166_at AT1G65370 [TRAF-like family protein] -0.177 -0.098
55 254096_at AT4G25150 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.172 0.128
56 262633_at AT1G06630 [F-box/RNI-like superfamily protein] -0.167 0.014
57 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.161 -0.112
58 248291_at AT5G53020 [Ribonuclease P protein subunit P38-related] -0.160 0.284
59 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 -0.152 -0.050
60 254160_at AT4G24210 SLY1, SLEEPY1 -0.150 -0.095
61 258581_at AT3G04160 unknown -0.146 -0.145
62 249189_at AT5G42780 AtHB27, homeobox protein 27, HB27, homeobox protein 27, ZHD13, ZINC FINGER HOMEODOMAIN 13 -0.145 -0.123
63 258029_at AT3G27580 ATPK7, D6PKL3, D6 PROTEIN KINASE LIKE 3 -0.144 0.015
64 257209_at AT3G14920 [Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein] -0.143 -0.180
65 253132_at AT4G35580 CBNAC, calmodulin-binding NAC protein, NTL9, NAC transcription factor-like 9 -0.141 0.249
66 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 -0.140 0.022
67 246285_at AT4G36980 unknown -0.136 -0.047