4.0:Information of module
WT 3H Cold
In comparison with Col-0-30min IAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 6.913e-45
GO:0010243 response to organonitrogen compound BP 4.630e-44
GO:0009719 response to endogenous stimulus BP 4.607e-33
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009668 plastid membrane organization BP 3.704e-04
GO:0010027 thylakoid membrane organization BP 3.704e-04
GO:0009913 epidermal cell differentiation BP 7.672e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT 3H Cold		 Log2 signal ratio
Col-0-30min IAA
1 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 1.393 0.495
2 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 1.349 0.207
3 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 1.345 0.152
4 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 1.237 0.339
5 259879_at AT1G76650 CML38, calmodulin-like 38 1.209 0.085
6 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 1.103 0.143
7 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 1.070 0.192
8 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 1.030 0.301
9 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 1.014 0.293
10 253643_at AT4G29780 unknown 1.006 0.221
11 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 1.002 0.277
12 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.984 0.371
13 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.965 0.204
14 247431_at AT5G62520 SRO5, similar to RCD one 5 0.960 0.142
15 248432_at AT5G51390 unknown 0.946 0.037
16 251336_at AT3G61190 BAP1, BON association protein 1 0.940 0.144
17 256442_at AT3G10930 unknown 0.922 0.188
18 258792_at AT3G04640 [glycine-rich protein] 0.921 0.202
19 264314_at AT1G70420 unknown 0.917 0.155
20 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.909 0.070
21 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.893 0.153
22 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.864 0.151
23 248389_at AT5G51990 CBF4, C-repeat-binding factor 4, DREB1D, DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 0.861 0.161
24 253830_at AT4G27652 unknown 0.849 0.152
25 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.847 0.395
26 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.831 0.355
27 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.823 0.321
28 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.823 0.094
29 262452_at AT1G11210 unknown 0.797 0.117
30 257925_at AT3G23170 unknown 0.789 0.056
31 255733_at AT1G25400 unknown 0.785 0.150
32 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.731 0.177
33 250098_at AT5G17350 unknown 0.721 0.285
34 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.712 0.186
35 246018_at AT5G10695 unknown 0.699 0.195
36 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.695 0.145
37 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.687 0.155
38 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.680 0.194
39 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.678 0.127
40 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.660 0.300
41 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.655 0.033
42 253243_at AT4G34560 unknown -0.250 -0.128
43 255472_at AT4G02430 At-SR34b, Serine/Arginine-Rich Protein Splicing Factor 34b, SR34b, Serine/Arginine-Rich Protein Splicing Factor 34b -0.215 -0.042
44 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.163 0.109
45 260277_at AT1G80520 [Sterile alpha motif (SAM) domain-containing protein] -0.158 -0.075
46 265540_at AT2G15810 [Mutator-like transposase family, has a 1.5e-12 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.142 -0.001
47 266519_at AT2G35155 [Trypsin family protein] -0.137 -0.025
48 249841_at AT5G23520 [smr (Small MutS Related) domain-containing protein] -0.136 -0.053
49 253545_at AT4G31310 [AIG2-like (avirulence induced gene) family protein] -0.130 -0.011
50 253486_at AT4G31600 UTr7, UDP-galactose transporter 7 -0.128 0.015
51 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] -0.128 0.077
52 262193_at AT1G77840 [Translation initiation factor IF2/IF5] -0.122 -0.060
53 258951_at AT3G01380 [transferases] -0.120 0.019
54 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.120 -0.037
55 257571_at AT3G16870 GATA17, GATA transcription factor 17 -0.119 -0.020
56 264542_at AT1G55830 unknown -0.118 -0.095
57 263370_at AT2G20500 unknown -0.117 0.023
58 253742_at AT4G28900 [copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] -0.116 -0.022
59 252747_at AT3G43320 unknown -0.112 -0.032
60 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] -0.111 -0.018
61 267249_at AT2G23040 unknown -0.111 -0.028
62 265812_at AT2G18070 unknown -0.110 -0.011
63 246285_at AT4G36980 unknown -0.106 -0.046
64 254246_at AT4G23250 CRK17, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 17, DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, RKC1, RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY(CLONTECH).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1 -0.105 -0.010
65 254168_at AT4G24250 ATMLO13, MILDEW RESISTANCE LOCUS O 13, MLO13, MILDEW RESISTANCE LOCUS O 13 -0.105 0.003
66 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 -0.103 -0.053
67 252615_at AT3G45230 APAP1, ARABINOXYLAN PECTIN ARABINOGALACTAN PROTEIN 1 -0.103 0.013
68 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.103 -0.024
69 246347_at AT3G56830 unknown -0.103 -0.044
70 248635_at AT5G49050 unknown -0.100 -0.047
71 246264_at AT1G31814 FRL2, FRIGIDA like 2 -0.098 -0.065
72 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.097 -0.061
73 246062_at AT5G19330 ARIA, ARM repeat protein interacting with ABF2 -0.097 -0.046
74 255666_at AT4G00390 [DNA-binding storekeeper protein-related transcriptional regulator] -0.096 -0.055
75 262702_at AT1G16220 [Protein phosphatase 2C family protein] -0.095 -0.072
76 258917_at AT3G10630 [UDP-Glycosyltransferase superfamily protein] -0.095 -0.034
77 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.093 0.028
78 250376_at AT5G11550 [ARM repeat superfamily protein] -0.092 -0.054
79 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.092 -0.083
80 256519_at AT1G66110 unknown -0.091 -0.038
81 266169_at AT2G38900 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.091 -0.010