4.0:Information of module
WT 3H Cold
In comparison with root epidermis and lateral root cap 40 mM NaCl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 6.913e-45
GO:0010243 response to organonitrogen compound BP 4.630e-44
GO:0009719 response to endogenous stimulus BP 4.607e-33
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009668 plastid membrane organization BP 3.704e-04
GO:0010027 thylakoid membrane organization BP 3.704e-04
GO:0009913 epidermal cell differentiation BP 7.672e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT 3H Cold		 Log2 signal ratio
root epidermis and lateral root cap 40 mM NaCl
1 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 1.393 0.404
2 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 1.349 0.278
3 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 1.345 0.574
4 264617_at AT2G17660 [RPM1-interacting protein 4 (RIN4) family protein] 1.237 0.535
5 259879_at AT1G76650 CML38, calmodulin-like 38 1.209 0.309
6 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 1.103 0.081
7 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 1.070 0.220
8 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 1.030 0.237
9 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 1.014 0.411
10 253643_at AT4G29780 unknown 1.006 0.253
11 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 1.002 0.287
12 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.984 0.158
13 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.965 0.294
14 247431_at AT5G62520 SRO5, similar to RCD one 5 0.960 0.329
15 248432_at AT5G51390 unknown 0.946 0.356
16 251336_at AT3G61190 BAP1, BON association protein 1 0.940 0.260
17 256442_at AT3G10930 unknown 0.922 0.397
18 258792_at AT3G04640 [glycine-rich protein] 0.921 0.452
19 264314_at AT1G70420 unknown 0.917 0.204
20 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.909 0.483
21 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.893 0.110
22 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 0.864 0.201
23 248389_at AT5G51990 CBF4, C-repeat-binding factor 4, DREB1D, DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 0.861 0.336
24 253830_at AT4G27652 unknown 0.849 -0.035
25 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.847 0.759
26 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.831 0.101
27 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.823 0.342
28 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.823 0.206
29 262452_at AT1G11210 unknown 0.797 0.686
30 257925_at AT3G23170 unknown 0.789 -0.063
31 255733_at AT1G25400 unknown 0.785 0.400
32 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.731 0.424
33 250098_at AT5G17350 unknown 0.721 0.136
34 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.712 0.278
35 246018_at AT5G10695 unknown 0.699 0.365
36 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.695 0.147
37 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.687 0.102
38 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.680 0.475
39 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.678 0.126
40 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.660 0.338
41 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.655 0.160
42 253243_at AT4G34560 unknown -0.250 -0.020
43 255472_at AT4G02430 At-SR34b, Serine/Arginine-Rich Protein Splicing Factor 34b, SR34b, Serine/Arginine-Rich Protein Splicing Factor 34b -0.215 -0.017
44 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.163 -0.025
45 260277_at AT1G80520 [Sterile alpha motif (SAM) domain-containing protein] -0.158 -0.309
46 265540_at AT2G15810 [Mutator-like transposase family, has a 1.5e-12 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.142 -0.036
47 266519_at AT2G35155 [Trypsin family protein] -0.137 -0.019
48 249841_at AT5G23520 [smr (Small MutS Related) domain-containing protein] -0.136 -0.078
49 253545_at AT4G31310 [AIG2-like (avirulence induced gene) family protein] -0.130 -0.427
50 253486_at AT4G31600 UTr7, UDP-galactose transporter 7 -0.128 -0.247
51 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] -0.128 -0.009
52 262193_at AT1G77840 [Translation initiation factor IF2/IF5] -0.122 -0.011
53 258951_at AT3G01380 [transferases] -0.120 -0.360
54 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.120 0.374
55 257571_at AT3G16870 GATA17, GATA transcription factor 17 -0.119 -0.177
56 264542_at AT1G55830 unknown -0.118 0.177
57 263370_at AT2G20500 unknown -0.117 0.132
58 253742_at AT4G28900 [copia-like retrotransposon family, has a 7.7e-236 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays)] -0.116 -0.013
59 252747_at AT3G43320 unknown -0.112 -0.007
60 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] -0.111 -0.034
61 267249_at AT2G23040 unknown -0.111 -0.017
62 265812_at AT2G18070 unknown -0.110 -0.063
63 246285_at AT4G36980 unknown -0.106 -0.047
64 254246_at AT4G23250 CRK17, CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 17, DUF26-21, EMB1290, EMBRYO DEFECTIVE 1290, RKC1, RECEPTOR-LIKE KINASE THALIANACOL-0GENOMICLIBRARY(CLONTECH).THEPOSITIVEPHAGECLONES C-X8-C-X2-C CLASS 1 -0.105 0.078
65 254168_at AT4G24250 ATMLO13, MILDEW RESISTANCE LOCUS O 13, MLO13, MILDEW RESISTANCE LOCUS O 13 -0.105 -0.031
66 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 -0.103 0.065
67 252615_at AT3G45230 APAP1, ARABINOXYLAN PECTIN ARABINOGALACTAN PROTEIN 1 -0.103 -0.056
68 250424_at AT5G10550 GTE2, global transcription factor group E2 -0.103 0.070
69 246347_at AT3G56830 unknown -0.103 0.031
70 248635_at AT5G49050 unknown -0.100 0.054
71 246264_at AT1G31814 FRL2, FRIGIDA like 2 -0.098 -0.086
72 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.097 0.052
73 246062_at AT5G19330 ARIA, ARM repeat protein interacting with ABF2 -0.097 -0.009
74 255666_at AT4G00390 [DNA-binding storekeeper protein-related transcriptional regulator] -0.096 -0.011
75 262702_at AT1G16220 [Protein phosphatase 2C family protein] -0.095 -0.162
76 258917_at AT3G10630 [UDP-Glycosyltransferase superfamily protein] -0.095 -0.037
77 265300_at AT2G13950 [Cysteine/Histidine-rich C1 domain family protein] -0.093 0.081
78 250376_at AT5G11550 [ARM repeat superfamily protein] -0.092 0.071
79 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.092 -0.002
80 256519_at AT1G66110 unknown -0.091 0.058
81 266169_at AT2G38900 [Serine protease inhibitor, potato inhibitor I-type family protein] -0.091 0.023