4.0:Information of module
ABI3GR +DEX +CHX
In comparison with seed during stratification 1 h S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009737 response to abscisic acid BP 8.121e-09
GO:0001101 response to acid chemical BP 1.898e-08
GO:0033993 response to lipid BP 3.913e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 1.447e-07
GO:0009753 response to jasmonic acid BP 2.504e-06
GO:0009414 response to water deprivation BP 2.826e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ABI3GR +DEX +CHX		 Log2 signal ratio
seed during stratification 1 h S
1 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.949 1.292
2 251202_at AT3G63040 unknown 0.947 0.340
3 253904_at AT4G27140 AT2S1, SESA1, seed storage albumin 1 0.717 1.403
4 266486_at AT2G47950 unknown 0.641 -0.858
5 263175_at AT1G05510 OBAP1a, Oil Body-Associated Protein 1a 0.619 0.842
6 250118_at AT5G16460 [Putative adipose-regulatory protein (Seipin)] 0.617 0.744
7 248125_at AT5G54740 SESA5, seed storage albumin 5 0.615 1.188
8 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.615 0.828
9 247672_at AT5G60220 TET4, tetraspanin4 0.587 0.470
10 256931_at AT3G22490 [Seed maturation protein] 0.547 0.700
11 256814_at AT3G21370 BGLU19, beta glucosidase 19 0.543 0.869
12 259314_at AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 0.527 0.463
13 247421_at AT5G62800 [Protein with RING/U-box and TRAF-like domains] 0.523 0.329
14 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] 0.517 2.105
15 251838_at AT3G54940 [Papain family cysteine protease] 0.509 1.327
16 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 0.508 1.562
17 248915_at AT5G45690 unknown 0.504 0.679
18 250010_at AT5G18450 [Integrase-type DNA-binding superfamily protein] 0.499 1.714
19 266468_at AT2G47960 unknown 0.496 0.355
20 246971_at AT5G24940 [Protein phosphatase 2C family protein] 0.428 -0.259
21 261170_at AT1G04910 [O-fucosyltransferase family protein] 0.413 1.016
22 248763_at AT5G47550 [Cystatin/monellin superfamily protein] 0.410 1.386
23 262069_at AT1G80090 CBSX4, CBS domain containing protein 4 0.410 0.702
24 257056_at AT3G15350 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.407 -0.181
25 253009_at AT4G37930 SHM1, serine transhydroxymethyltransferase 1, SHMT1, SERINE HYDROXYMETHYLTRANSFERASE 1, STM, SERINE TRANSHYDROXYMETHYLTRANSFERASE 0.406 -0.346
26 246548_at AT5G14910 [Heavy metal transport/detoxification superfamily protein ] 0.406 0.208
27 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.404 -0.620
28 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.402 0.842
29 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J 0.369 0.906
30 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 0.366 -0.257
31 267253_at AT2G22960 [alpha/beta-Hydrolases superfamily protein] 0.364 0.146
32 263458_at AT2G22290 ATRAB-H1D, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, ATRAB6, ARABIDOPSIS RAB GTPASE HOMOLOG 6, ATRABH1D, RAB GTPase homolog H1D, RAB-H1D, RAB GTPASE HOMOLOG H1D, RABH1d, RAB GTPase homolog H1D 0.362 0.235
33 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 0.353 0.885
34 245671_at AT1G28230 ATPUP1, PUP1, purine permease 1 0.347 0.884
35 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.339 0.387
36 249330_at AT5G40970 unknown 0.335 0.313
37 263858_at AT2G04370 unknown 0.329 -1.060
38 253504_at AT4G31960 unknown 0.326 -1.254
39 253851_at AT4G28110 AtMYB41, myb domain protein 41, MYB41, myb domain protein 41 0.323 -0.836
40 246041_at AT5G19290 [alpha/beta-Hydrolases superfamily protein] -0.388 0.359
41 246991_at AT5G67400 RHS19, root hair specific 19 -0.371 -0.688
42 266972_at AT2G39590 [Ribosomal protein S8 family protein] -0.368 -1.009
43 248181_at AT5G54290 CcdA -0.361 0.681
44 255932_at AT1G12720 [Mutator-like transposase family, has a 1.2e-40 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.351 -0.054
45 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.345 -0.395
46 248116_at AT5G55020 ATMYB120, MYB120, myb domain protein 120 -0.339 -0.602
47 260199_at AT1G67590 [Remorin family protein] -0.327 0.018
48 253989_at AT4G26130 unknown -0.323 -0.411
49 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.316 -0.792
50 245279_at AT4G17270 [Mo25 family protein] -0.316 0.133
51 263592_at AT2G01840 [non-LTR retrotransposon family (LINE), has a 9.6e-34 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)] -0.300 -0.687
52 257915_at AT3G23130 FLO10, FLORAL DEFECTIVE 10, FON1, FLORAL ORGAN NUMBER 1, SUP, SUPERMAN -0.285 0.225
53 253800_at AT4G28160 [hydroxyproline-rich glycoprotein family protein] -0.276 -0.394
54 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] -0.269 -0.658
55 260210_at AT1G74420 ATFUT3, FUT3, fucosyltransferase 3 -0.258 -0.155
56 262818_at AT1G11755 LEW1, LEAF WILTING 1 -0.253 -0.020
57 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 -0.251 -0.277
58 263628_at AT2G04780 FLA7, FASCICLIN-like arabinoogalactan 7 -0.248 -0.474
59 257691_at AT3G12660 FLA14, FASCICLIN-like arabinogalactan protein 14 precursor -0.247 0.385
60 248619_at AT5G49630 AAP6, amino acid permease 6 -0.241 -0.949
61 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] -0.238 0.707
62 259430_at AT1G01610 ATGPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4, GPAT4, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 4 -0.238 -0.779
63 248052_at AT5G55800 [Cysteine/Histidine-rich C1 domain family protein] -0.237 0.233
64 261545_at AT1G63530 unknown -0.223 -1.132
65 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.221 -0.603
66 258478_at AT3G02710 [ARM repeat superfamily protein] -0.220 1.121
67 253686_at AT4G29750 [CRS1 / YhbY (CRM) domain-containing protein] -0.213 -0.378
68 260916_at AT1G02475 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.213 0.521
69 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.212 -0.298
70 248872_at AT5G46795 MSP2, microspore-specific promoter 2 -0.208 -0.412
71 264692_at AT1G70000 [myb-like transcription factor family protein] -0.201 -0.632
72 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.200 -0.124
73 250927_at AT5G03270 LOG6, LONELY GUY 6 -0.195 -0.736
74 258506_at AT3G06520 [agenet domain-containing protein] -0.192 0.501
75 258165_at AT3G17900 unknown -0.183 0.702
76 248375_at AT5G51710 ATKEA5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, KEA5, K+ efflux antiporter 5 -0.181 0.748
77 251445_at AT3G59870 unknown -0.180 0.620