4.0:Information of module
msg2
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0090407 organophosphate biosynthetic process BP 7.558e-09
GO:1901564 organonitrogen compound metabolic proces... BP 1.337e-08
GO:0044711 single-organism biosynthetic process BP 2.461e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0046173 polyol biosynthetic process BP 1.011e-08
GO:0050896 response to stimulus BP 3.999e-08
GO:0010033 response to organic substance BP 6.753e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msg2		 Log2 signal ratio
Leafminer damaged seedlings
1 252612_at AT3G45160 [Putative membrane lipoprotein] 0.446 -0.448
2 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.425 0.015
3 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.352 -0.118
4 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.349 0.128
5 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.331 0.020
6 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 0.284 0.122
7 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] 0.275 0.050
8 260890_at AT1G29090 [Cysteine proteinases superfamily protein] 0.272 -0.046
9 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.252 0.043
10 260251_at AT1G74250 [DNAJ heat shock N-terminal domain-containing protein] 0.245 0.005
11 247046_at AT5G66540 unknown 0.236 -0.015
12 255595_at AT4G01700 [Chitinase family protein] 0.227 0.393
13 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 0.222 -0.034
14 252898_at AT4G39500 CYP96A11, cytochrome P450, family 96, subfamily A, polypeptide 11 0.221 -0.054
15 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 0.216 0.805
16 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.209 -0.311
17 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.206 -0.048
18 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.205 -0.016
19 257685_at AT3G12770 MEF22, mitochondrial editing factor 22 0.200 -0.038
20 247257_at AT5G64760 RPN5B, regulatory particle non-ATPase subunit 5B 0.190 -0.002
21 246850_at AT5G26860 LON1, lon protease 1, LON_ARA_ARA 0.189 -0.032
22 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 0.185 -0.281
23 256927_at AT3G22550 unknown 0.183 -0.084
24 245076_at AT2G23170 GH3.3 0.180 0.781
25 255763_at AT1G16730 unknown 0.177 -0.219
26 258736_at AT3G05900 [neurofilament protein-related] 0.173 -0.315
27 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.172 -0.146
28 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 0.170 -0.070
29 245293_at AT4G16660 [heat shock protein 70 (Hsp 70) family protein] 0.168 0.109
30 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.163 -0.013
31 260025_at AT1G30070 [SGS domain-containing protein] 0.162 -0.272
32 246570_at AT5G14990 unknown 0.162 -0.014
33 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.159 -0.115
34 251256_at AT3G62300 unknown 0.159 -0.278
35 258585_at AT3G04340 emb2458, embryo defective 2458 0.158 -0.199
36 246334_at AT3G44850 [Protein kinase superfamily protein] 0.158 0.064
37 256623_at AT3G19960 ATM1, myosin 1 0.157 -0.237
38 263939_at AT2G36070 ATTIM44-2, translocase inner membrane subunit 44-2, TIM44-2, translocase inner membrane subunit 44-2 0.156 -0.039
39 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 0.156 -0.224
40 258840_at AT3G04620 DAN1, D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN 1 0.156 0.300
41 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.153 -0.383
42 253807_at AT4G28280 LLG3, LORELEI-LIKE-GPI ANCHORED PROTEIN 3 0.150 0.126
43 258871_at AT3G03060 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.146 -0.088
44 251012_at AT5G02580 unknown 0.145 0.353
45 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.143 -0.076
46 248099_at AT5G55300 MGO1, MGOUN 1, TOP1, TOPOISOMERASE 1, TOP1ALPHA, DNA topoisomerase I alpha 0.142 -0.171
47 259678_at AT1G77750 [Ribosomal protein S13/S18 family] 0.141 -0.026
48 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] 0.140 -0.177
49 263034_at AT1G24020 MLP423, MLP-like protein 423 0.140 -0.111
50 255586_at AT4G01560 MEE49, maternal effect embryo arrest 49 0.139 -0.006
51 257206_at AT3G16530 [Legume lectin family protein] 0.138 0.406
52 247225_at AT5G65090 BST1, BRISTLED 1, DER4, DEFORMED ROOT HAIRS 4, MRH3 0.137 0.066
53 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.136 0.097
54 248307_at AT5G52850 [Pentatricopeptide repeat (PPR) superfamily protein] 0.135 -0.075
55 251339_at AT3G60780 unknown 0.133 0.002
56 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.130 -0.687
57 248021_at AT5G56500 Cpn60beta3, chaperonin-60beta3 0.130 -0.123
58 249309_at AT5G41410 BEL1, BELL 1 0.129 -0.094
59 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.127 -0.029
60 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.122 0.198
61 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.121 -0.077
62 263488_at AT2G31840 MRL7-L, Mesophyll-cell RNAi Library line 7-like 0.118 -0.045
63 254114_at AT4G24980 UMAMIT16-psi, Usually multiple acids move in and out Transporters 16-pseudogene 0.118 -0.017
64 262898_at AT1G59850 [ARM repeat superfamily protein] 0.118 -0.184
65 258293_at AT3G23430 ATPHO1, ARABIDOPSIS PHOSPHATE 1, PHO1, phosphate 1 0.118 -0.404
66 247024_at AT5G66985 unknown 0.117 -0.016
67 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.923 -0.287
68 259799_at AT1G72290 [Kunitz family trypsin and protease inhibitor protein] -0.713 -0.022
69 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -0.668 0.837
70 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 -0.639 0.852
71 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 -0.603 0.444
72 261020_at AT1G26390 [FAD-binding Berberine family protein] -0.548 0.636
73 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.505 -0.480
74 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.488 0.511
75 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.479 0.549
76 264774_at AT1G22890 unknown -0.447 0.444
77 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.444 0.015
78 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.439 -0.783
79 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.422 -0.289
80 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.401 0.447
81 252356_at AT3G48370 [copia-like retrotransposon family, has a 7.2e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)] -0.396 -0.046
82 261958_at AT1G64500 [Glutaredoxin family protein] -0.394 -0.387
83 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.375 0.685
84 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.373 -0.281
85 257081_at AT3G30460 [RING/U-box superfamily protein] -0.370 -0.244
86 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.360 1.403
87 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.356 0.597
88 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.352 0.505
89 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 -0.345 -0.174
90 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 -0.345 0.576
91 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.342 -0.118
92 256602_at AT3G28310 unknown -0.339 0.014
93 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.337 0.062
94 258490_at AT3G02670 [Glycine-rich protein family] -0.329 -0.051
95 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.308 -0.042
96 266877_at AT2G44570 AtGH9B12, glycosyl hydrolase 9B12, GH9B12, glycosyl hydrolase 9B12 -0.302 -0.020
97 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 -0.300 -0.188
98 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.296 0.001
99 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE -0.291 -0.176
100 250099_at AT5G17300 RVE1, REVEILLE 1 -0.284 -0.650
101 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.282 0.581
102 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.270 0.211
103 267085_at AT2G32620 ATCSLB02, cellulose synthase-like B, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, CELLULOSE SYNTHASE LIKE B2, CSLB02, cellulose synthase-like B -0.270 -0.048
104 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.270 0.559
105 251727_at AT3G56290 unknown -0.268 -0.250
106 266712_at AT2G46750 AtGulLO2, GulLO2, L -gulono-1,4-lactone ( L -GulL) oxidase 2 -0.258 0.064
107 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.257 0.597
108 245674_at AT1G56680 [Chitinase family protein] -0.249 0.021
109 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.246 -0.561
110 252137_at AT3G50980 XERO1, dehydrin xero 1 -0.242 0.097
111 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.242 -0.179
112 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] -0.240 0.473
113 252765_at AT3G42800 unknown -0.234 -0.176
114 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 -0.234 0.518
115 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 -0.230 0.076
116 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.230 1.073
117 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 -0.229 0.337
118 262421_at AT1G50290 unknown -0.228 -0.009
119 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.227 -0.213
120 249010_at AT5G44580 unknown -0.224 -0.018
121 254794_at AT4G12970 EPFL9, STOMAGEN, STOMAGEN -0.221 -0.536
122 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -0.218 -0.256
123 263653_at AT1G04310 ERS2, ethylene response sensor 2 -0.209 -0.217
124 267119_at AT2G32610 ATCSLB01, cellulose synthase-like B1, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, CELLULOSE SYNTHASE LIKE B1, CSLB01, cellulose synthase-like B1 -0.209 -0.038
125 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.202 0.073
126 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.201 1.024
127 258223_at AT3G15840 PIFI, post-illumination chlorophyll fluorescence increase -0.196 0.097
128 249622_at AT5G37550 unknown -0.195 -0.044
129 250128_at AT5G16540 ZFN3, zinc finger nuclease 3 -0.194 -0.222
130 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -0.194 0.749
131 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 -0.189 -0.075
132 251143_at AT5G01220 SQD2, sulfoquinovosyldiacylglycerol 2 -0.189 -0.316