4.0:Information of module
msg2-BR
In comparison with ptpks2 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 1.123e-16
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 1.475e-16
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 5.533e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 7.456e-12
GO:0010033 response to organic substance BP 1.736e-11
GO:0009725 response to hormone BP 1.570e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msg2-BR		 Log2 signal ratio
ptpks2
1 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.658 -0.118
2 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.588 -0.093
3 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.507 -0.107
4 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.507 0.092
5 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.470 0.265
6 252888_at AT4G39210 APL3 0.382 0.103
7 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.372 0.170
8 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.347 0.041
9 263377_at AT2G40220 ABI4, ABA INSENSITIVE 4, ATABI4, GIN6, GLUCOSE INSENSITIVE 6, ISI3, IMPAIRED SUCROSE INDUCTION 3, SAN5, SALOBRENO 5, SIS5, SUGAR-INSENSITIVE 5, SUN6, SUCROSE UNCOUPLED 6 0.323 -0.044
10 263034_at AT1G24020 MLP423, MLP-like protein 423 0.302 0.186
11 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.296 -0.120
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.284 -0.098
13 247070_at AT5G66815 unknown 0.271 -0.239
14 253215_at AT4G34950 [Major facilitator superfamily protein] 0.255 0.130
15 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J 0.251 -0.053
16 265327_at AT2G18210 unknown 0.236 -0.092
17 252043_at AT3G52390 [TatD related DNase] 0.232 -0.122
18 258871_at AT3G03060 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.229 -0.150
19 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.227 0.077
20 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] 0.222 -0.036
21 261910_at AT1G80730 ATZFP1, ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, ZFP1, zinc-finger protein 1 0.219 -0.038
22 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.217 -0.103
23 247190_at AT5G65420 CYCD4;1, CYCLIN D4;1 0.212 -0.064
24 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.211 0.355
25 248854_at AT5G46580 [pentatricopeptide (PPR) repeat-containing protein] 0.211 0.088
26 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 0.203 0.100
27 249258_at AT5G41650 [Lactoylglutathione lyase / glyoxalase I family protein] 0.201 -0.091
28 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.200 0.057
29 254009_at AT4G26390 [Pyruvate kinase family protein] 0.200 -0.074
30 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.197 -0.060
31 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.196 0.286
32 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] 0.195 0.107
33 258505_at AT3G06530 [ARM repeat superfamily protein] 0.188 -0.094
34 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 0.183 0.099
35 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 0.183 -0.109
36 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.183 0.019
37 258966_at AT3G10690 GYRA, DNA GYRASE A 0.179 -0.079
38 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 0.179 0.118
39 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.176 -0.109
40 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.175 -0.091
41 248211_at AT5G54010 [UDP-Glycosyltransferase superfamily protein] 0.173 -0.001
42 256409_at AT1G66620 [Protein with RING/U-box and TRAF-like domains] 0.171 0.037
43 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.168 0.063
44 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.166 0.055
45 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.165 -0.143
46 251915_at AT3G53940 [Mitochondrial substrate carrier family protein] 0.164 -0.077
47 246210_at AT4G36420 [Ribosomal protein L12 family protein] 0.164 0.087
48 265863_at AT2G01770 ATVIT1, VIT1, vacuolar iron transporter 1 0.163 -0.241
49 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.162 0.115
50 256927_at AT3G22550 unknown 0.159 0.042
51 255817_at AT2G33330 PDLP3, plasmodesmata-located protein 3 0.158 0.115
52 260331_at AT1G80270 PPR596, PENTATRICOPEPTIDE REPEAT 596 0.153 0.212
53 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] 0.149 0.003
54 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.823 -0.113
55 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 -0.664 0.004
56 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 -0.654 -0.046
57 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.568 -0.059
58 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.528 -0.216
59 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 -0.504 -0.265
60 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.484 0.025
61 246684_at AT5G33340 CDR1, CONSTITUTIVE DISEASE RESISTANCE 1 -0.466 -0.098
62 250798_at AT5G05340 PRX52, peroxidase 52 -0.463 -0.079
63 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.443 0.031
64 256097_at AT1G13670 unknown -0.432 -0.100
65 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.422 -0.027
66 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.413 -0.212
67 266392_at AT2G41280 ATM10, M10 -0.394 0.064
68 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.381 -0.006
69 263556_at AT2G16365 [F-box family protein] -0.370 0.029
70 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.370 -0.029
71 263892_at AT2G36890 ATMYB38, MYB DOMAIN PROTEIN 38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB38, MYB DOMAIN PROTEIN 38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2 -0.367 -0.100
72 265590_at AT2G20160 ASK17, ARABIDOPSIS SKP1-LIKE 17, MEO, MEIDOS -0.358 -0.114
73 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.354 0.020
74 266611_at AT2G14960 GH3.1 -0.328 -0.045
75 258736_at AT3G05900 [neurofilament protein-related] -0.321 0.039
76 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.316 -0.065
77 250099_at AT5G17300 RVE1, REVEILLE 1 -0.315 -0.128
78 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.309 -0.124
79 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A -0.309 -0.315
80 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 -0.302 -0.036
81 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.292 -0.074
82 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.287 0.134
83 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.283 -0.046
84 267085_at AT2G32620 ATCSLB02, cellulose synthase-like B, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, CELLULOSE SYNTHASE LIKE B2, CSLB02, cellulose synthase-like B -0.283 0.037
85 264788_at AT2G17880 DJC24, DNA J protein C24 -0.275 -0.117
86 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.272 -0.101
87 266877_at AT2G44570 AtGH9B12, glycosyl hydrolase 9B12, GH9B12, glycosyl hydrolase 9B12 -0.270 -0.116
88 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.268 -0.015
89 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.263 0.060
90 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.260 -0.148
91 258468_at AT3G06070 unknown -0.254 -0.023
92 260004_at AT1G67860 unknown -0.253 0.216
93 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.250 -0.030
94 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.249 -0.128
95 253832_at AT4G27654 unknown -0.247 -0.264
96 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.244 -0.090
97 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.238 -0.114
98 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 -0.237 0.157
99 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.237 -0.069
100 258388_at AT3G15370 ATEXP12, ATEXPA12, expansin 12, ATHEXP ALPHA 1.24, EXP12, EXPANSIN 12, EXPA12, expansin 12 -0.237 -0.012
101 245119_at AT2G41640 [Glycosyltransferase family 61 protein] -0.231 -0.198
102 266097_at AT2G37970 AtHBP2, HBP2, haem-binding protein 2, SOUL-1 -0.231 0.046
103 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -0.229 -0.118
104 264565_at AT1G05280 unknown -0.228 -0.084
105 250023_at AT5G18220 [O-Glycosyl hydrolases family 17 protein] -0.228 -0.171