4.0:Information of module
msg2-BR
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009220 pyrimidine ribonucleotide biosynthetic p... BP 1.123e-16
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 1.475e-16
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 5.533e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 7.456e-12
GO:0010033 response to organic substance BP 1.736e-11
GO:0009725 response to hormone BP 1.570e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msg2-BR		 Log2 signal ratio
bri1-116
1 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.658 -0.020
2 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.588 -0.694
3 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.507 0.231
4 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 0.507 0.702
5 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.470 0.052
6 252888_at AT4G39210 APL3 0.382 0.067
7 250006_at AT5G18660 PCB2, PALE-GREEN AND CHLOROPHYLL B REDUCED 2 0.372 0.512
8 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.347 0.196
9 263377_at AT2G40220 ABI4, ABA INSENSITIVE 4, ATABI4, GIN6, GLUCOSE INSENSITIVE 6, ISI3, IMPAIRED SUCROSE INDUCTION 3, SAN5, SALOBRENO 5, SIS5, SUGAR-INSENSITIVE 5, SUN6, SUCROSE UNCOUPLED 6 0.323 0.124
10 263034_at AT1G24020 MLP423, MLP-like protein 423 0.302 0.047
11 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 0.296 0.041
12 258941_at AT3G09940 ATMDAR3, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, MDAR2, MONODEHYDROASCORBATE REDUCTASE 2, MDAR3, MONODEHYDROASCORBATE REDUCTASE 3, MDHAR, monodehydroascorbate reductase 0.284 -0.233
13 247070_at AT5G66815 unknown 0.271 -0.099
14 253215_at AT4G34950 [Major facilitator superfamily protein] 0.255 0.377
15 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J 0.251 0.142
16 265327_at AT2G18210 unknown 0.236 -0.381
17 252043_at AT3G52390 [TatD related DNase] 0.232 0.211
18 258871_at AT3G03060 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.229 0.023
19 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.227 0.037
20 248476_at AT5G50890 [alpha/beta-Hydrolases superfamily protein] 0.222 -0.136
21 261910_at AT1G80730 ATZFP1, ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, ZFP1, zinc-finger protein 1 0.219 0.070
22 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.217 0.499
23 247190_at AT5G65420 CYCD4;1, CYCLIN D4;1 0.212 0.071
24 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.211 0.231
25 248854_at AT5G46580 [pentatricopeptide (PPR) repeat-containing protein] 0.211 0.195
26 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 0.203 -0.286
27 249258_at AT5G41650 [Lactoylglutathione lyase / glyoxalase I family protein] 0.201 0.279
28 250471_at AT5G10170 ATMIPS3, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3, MIPS3, myo-inositol-1-phosphate synthase 3 0.200 0.156
29 254009_at AT4G26390 [Pyruvate kinase family protein] 0.200 0.484
30 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.197 0.396
31 261168_at AT1G04945 [HIT-type Zinc finger family protein] 0.196 -0.070
32 266049_at AT2G40780 [Nucleic acid-binding, OB-fold-like protein] 0.195 0.074
33 258505_at AT3G06530 [ARM repeat superfamily protein] 0.188 0.015
34 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 0.183 0.096
35 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 0.183 -0.221
36 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 0.183 0.072
37 258966_at AT3G10690 GYRA, DNA GYRASE A 0.179 -0.009
38 260531_at AT2G47240 CER8, ECERIFERUM 8, LACS1, LONG-CHAIN ACYL-COA SYNTHASE 1 0.179 0.126
39 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.176 -0.000
40 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] 0.175 0.043
41 248211_at AT5G54010 [UDP-Glycosyltransferase superfamily protein] 0.173 0.106
42 256409_at AT1G66620 [Protein with RING/U-box and TRAF-like domains] 0.171 -0.108
43 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] 0.168 0.106
44 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.166 0.028
45 253492_at AT4G31810 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] 0.165 0.042
46 251915_at AT3G53940 [Mitochondrial substrate carrier family protein] 0.164 0.045
47 246210_at AT4G36420 [Ribosomal protein L12 family protein] 0.164 -0.058
48 265863_at AT2G01770 ATVIT1, VIT1, vacuolar iron transporter 1 0.163 -0.321
49 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.162 0.151
50 256927_at AT3G22550 unknown 0.159 0.079
51 255817_at AT2G33330 PDLP3, plasmodesmata-located protein 3 0.158 -0.011
52 260331_at AT1G80270 PPR596, PENTATRICOPEPTIDE REPEAT 596 0.153 0.035
53 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] 0.149 0.152
54 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.823 0.007
55 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 -0.664 -0.235
56 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 -0.654 0.004
57 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.568 -0.583
58 258130_at AT3G24510 [Defensin-like (DEFL) family protein] -0.528 -0.031
59 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 -0.504 0.313
60 255694_at AT4G00050 UNE10, unfertilized embryo sac 10 -0.484 -0.302
61 246684_at AT5G33340 CDR1, CONSTITUTIVE DISEASE RESISTANCE 1 -0.466 -0.635
62 250798_at AT5G05340 PRX52, peroxidase 52 -0.463 -0.040
63 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.443 0.015
64 256097_at AT1G13670 unknown -0.432 -0.024
65 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.422 -0.095
66 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.413 -0.318
67 266392_at AT2G41280 ATM10, M10 -0.394 0.070
68 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.381 -0.112
69 263556_at AT2G16365 [F-box family protein] -0.370 -0.020
70 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.370 -0.541
71 263892_at AT2G36890 ATMYB38, MYB DOMAIN PROTEIN 38, BIT1, BLUE INSENSITIVE TRAIT 1, MYB38, MYB DOMAIN PROTEIN 38, RAX2, REGULATOR OF AXILLARY MERISTEMS 2 -0.367 -0.144
72 265590_at AT2G20160 ASK17, ARABIDOPSIS SKP1-LIKE 17, MEO, MEIDOS -0.358 -0.055
73 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 -0.354 0.241
74 266611_at AT2G14960 GH3.1 -0.328 -0.192
75 258736_at AT3G05900 [neurofilament protein-related] -0.321 -0.303
76 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 -0.316 -0.085
77 250099_at AT5G17300 RVE1, REVEILLE 1 -0.315 0.034
78 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.309 0.065
79 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A -0.309 -0.086
80 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 -0.302 0.247
81 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.292 -0.433
82 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.287 0.140
83 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.283 0.013
84 267085_at AT2G32620 ATCSLB02, cellulose synthase-like B, ATCSLB2, CELLULOSE SYNTHASE LIKE B2, CSLB02, CELLULOSE SYNTHASE LIKE B2, CSLB02, cellulose synthase-like B -0.283 -0.106
85 264788_at AT2G17880 DJC24, DNA J protein C24 -0.275 0.033
86 249606_at AT5G37260 CIR1, CIRCADIAN 1, RVE2, REVEILLE 2 -0.272 -0.093
87 266877_at AT2G44570 AtGH9B12, glycosyl hydrolase 9B12, GH9B12, glycosyl hydrolase 9B12 -0.270 -0.022
88 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.268 0.120
89 258983_at AT3G08860 PYD4, PYRIMIDINE 4 -0.263 0.011
90 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.260 -0.444
91 258468_at AT3G06070 unknown -0.254 -0.265
92 260004_at AT1G67860 unknown -0.253 0.204
93 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.250 0.079
94 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.249 0.071
95 253832_at AT4G27654 unknown -0.247 0.204
96 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.244 -0.165
97 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.238 0.038
98 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 -0.237 0.082
99 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.237 0.108
100 258388_at AT3G15370 ATEXP12, ATEXPA12, expansin 12, ATHEXP ALPHA 1.24, EXP12, EXPANSIN 12, EXPA12, expansin 12 -0.237 0.289
101 245119_at AT2G41640 [Glycosyltransferase family 61 protein] -0.231 -0.262
102 266097_at AT2G37970 AtHBP2, HBP2, haem-binding protein 2, SOUL-1 -0.231 0.049
103 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -0.229 -0.027
104 264565_at AT1G05280 unknown -0.228 0.061
105 250023_at AT5G18220 [O-Glycosyl hydrolases family 17 protein] -0.228 0.151