4.0:Information of module
BR
In comparison with aerial organ callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 8.854e-10
GO:0009607 response to biotic stimulus BP 1.838e-08
GO:0043207 response to external biotic stimulus BP 3.805e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 3.351e-09
GO:1901700 response to oxygen-containing compound BP 7.115e-09
GO:0042221 response to chemical BP 1.130e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
BR		 Log2 signal ratio
aerial organ callus inducing medium 48 h
1 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.756 0.495
2 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.690 0.745
3 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.682 -0.149
4 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.679 0.136
5 250798_at AT5G05340 PRX52, peroxidase 52 0.619 0.685
6 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.525 -0.093
7 258130_at AT3G24510 [Defensin-like (DEFL) family protein] 0.512 0.096
8 263825_at AT2G40370 LAC5, laccase 5 0.506 0.454
9 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.503 0.737
10 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.503 0.381
11 260556_at AT2G43620 [Chitinase family protein] 0.482 0.709
12 249881_at AT5G23190 CYP86B1, cytochrome P450, family 86, subfamily B, polypeptide 1 0.469 0.228
13 260035_at AT1G68850 [Peroxidase superfamily protein] 0.459 0.805
14 256211_at AT1G50960 ATGA2OX7, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, GA2OX7, gibberellin 2-oxidase 7 0.458 -0.025
15 252510_at AT3G46270 [receptor protein kinase-related] 0.434 -0.173
16 251531_at AT3G58550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.431 0.378
17 263005_at AT1G54540 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.431 0.436
18 266625_at AT2G35380 [Peroxidase superfamily protein] 0.429 0.559
19 254202_at AT4G24140 [alpha/beta-Hydrolases superfamily protein] 0.398 0.238
20 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.397 0.579
21 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.388 0.432
22 260234_at AT1G74460 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.380 0.462
23 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.378 -0.036
24 264635_at AT1G65500 unknown 0.361 0.475
25 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.353 0.256
26 261606_at AT1G49570 [Peroxidase superfamily protein] 0.343 0.001
27 250770_at AT5G05390 LAC12, laccase 12 0.339 -0.028
28 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.331 0.635
29 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.324 -0.034
30 246067_at AT5G19410 ABCG23, ATP-binding cassette G23 0.306 0.184
31 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.305 0.283
32 246526_at AT5G15720 GLIP7, GDSL-motif lipase 7 0.288 0.104
33 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.275 -0.119
34 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.272 0.523
35 263800_at AT2G24600 [Ankyrin repeat family protein] 0.265 -0.012
36 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.261 0.304
37 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.259 0.682
38 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 0.258 0.293
39 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.257 0.746
40 259799_at AT1G72290 [Kunitz family trypsin and protease inhibitor protein] 0.248 -0.100
41 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.241 -0.133
42 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.238 0.503
43 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor 0.237 0.063
44 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.232 0.574
45 246145_at AT5G19880 [Peroxidase superfamily protein] 0.226 0.042
46 265194_at AT1G05010 ACO4, ethylene forming enzyme, EAT1, EFE, ethylene-forming enzyme 0.221 0.052
47 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.215 0.839
48 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 0.211 0.289
49 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.991 -0.938
50 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.964 -0.036
51 247882_at AT5G57785 unknown -0.875 0.084
52 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.722 -0.456
53 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 -0.575 -0.219
54 259576_at AT1G35330 [RING/U-box superfamily protein] -0.533 -0.058
55 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.492 -0.462
56 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] -0.478 -0.237
57 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.449 0.751
58 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.447 -0.072
59 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.443 -0.475
60 248822_at AT5G47000 [Peroxidase superfamily protein] -0.441 -0.090
61 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.432 0.034
62 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase -0.419 0.307
63 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] -0.395 -0.020
64 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] -0.369 -0.549
65 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.342 -0.630
66 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] -0.337 -0.372
67 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.327 -0.303
68 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.318 0.067
69 265327_at AT2G18210 unknown -0.315 -0.066
70 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 -0.311 -0.039
71 245353_at AT4G16000 unknown -0.311 -0.272
72 247895_at AT5G58010 LRL3, LJRHL1-like 3 -0.307 -0.150
73 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.304 0.335
74 251774_at AT3G55840 [Hs1pro-1 protein] -0.283 -0.076
75 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.277 0.124
76 262304_at AT1G70890 MLP43, MLP-like protein 43 -0.273 -0.192
77 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 -0.272 -0.100
78 259384_at AT3G16450 JAL33, Jacalin-related lectin 33 -0.262 -0.149
79 261778_at AT1G76220 unknown -0.260 -0.055
80 249773_at AT5G24140 SQP2, squalene monooxygenase 2 -0.250 -0.040
81 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.250 -0.118
82 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.245 0.098
83 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 -0.244 -0.062
84 251356_at AT3G61060 AtPP2-A13, phloem protein 2-A13, PP2-A13, phloem protein 2-A13 -0.237 -0.243
85 256359_at AT1G66460 [Protein kinase superfamily protein] -0.226 0.092
86 260877_at AT1G21500 unknown -0.221 -0.479
87 260243_at AT1G63720 unknown -0.220 0.247
88 252211_at AT3G50220 IRX15, IRREGULAR XYLEM 15 -0.218 -0.061
89 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 -0.217 0.161
90 265511_at AT2G05540 [Glycine-rich protein family] -0.217 0.100
91 257673_at AT3G20370 [TRAF-like family protein] -0.216 -0.132
92 264832_at AT1G03660 [Ankyrin-repeat containing protein] -0.215 -0.116
93 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.213 0.493
94 247479_at AT5G62380 ANAC101, NAC-domain protein 101, NAC101, NAC-domain protein 101, VND6, VASCULAR-RELATED NAC-DOMAIN 6 -0.206 -0.081
95 255645_at AT4G00880 SAUR31, SMALL AUXIN UPREGULATED RNA 31 -0.205 -0.155