4.0:Information of module
Col-0 0h NAA
In comparison with Cocultivation 8 hrs root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048573 photoperiodism, flowering BP 1.547e-04
GO:0009648 photoperiodism BP 2.063e-04
GO:0009628 response to abiotic stimulus BP 3.853e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 2.929e-09
GO:0044699 single-organism process BP 1.443e-08
GO:0044710 single-organism metabolic process BP 8.556e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 0h NAA		 Log2 signal ratio
Cocultivation 8 hrs root
1 254300_at AT4G22780 ACR7, ACT domain repeat 7 0.353 0.010
2 249234_at AT5G42200 [RING/U-box superfamily protein] 0.351 -0.125
3 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.338 0.679
4 251039_at AT5G02020 SIS, Salt Induced Serine rich 0.320 0.196
5 263475_at AT2G31945 unknown 0.316 0.363
6 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.308 0.088
7 258878_at AT3G03170 unknown 0.308 -0.134
8 245445_at AT4G16750 [Integrase-type DNA-binding superfamily protein] 0.304 0.009
9 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 0.303 0.199
10 249944_at AT5G22290 anac089, NAC domain containing protein 89, FSQ6, fructose-sensing quantitative trait locus 6, NAC089, NAC domain containing protein 89 0.294 0.047
11 261118_at AT1G75460 [ATP-dependent protease La (LON) domain protein] 0.286 -0.018
12 249941_at AT5G22270 unknown 0.273 0.157
13 248464_at AT5G51160 [Ankyrin repeat family protein] 0.258 -0.084
14 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.257 0.540
15 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.234 0.570
16 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 0.233 -0.041
17 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 0.220 -0.098
18 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.214 0.053
19 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.212 0.284
20 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 0.211 -0.080
21 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.210 -0.179
22 263931_at AT2G36220 unknown 0.204 0.205
23 252255_at AT3G49220 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.194 -0.109
24 266835_at AT2G29990 NDA2, alternative NAD(P)H dehydrogenase 2 0.194 0.303
25 245789_at AT1G32090 [early-responsive to dehydration stress protein (ERD4)] 0.185 0.061
26 263757_at AT2G21430 [Papain family cysteine protease] 0.182 0.044
27 259340_at AT3G03870 unknown 0.180 0.219
28 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.176 -0.030
29 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.172 0.023
30 267140_at AT2G38250 [Homeodomain-like superfamily protein] 0.168 0.394
31 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.166 0.325
32 263947_at AT2G35820 [ureidoglycolate hydrolases] 0.166 0.013
33 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.164 -0.017
34 249117_at AT5G43840 AT-HSFA6A, heat shock transcription factor A6A, HSFA6A, heat shock transcription factor A6A 0.163 0.013
35 260875_at AT1G21410 SKP2A 0.161 0.169
36 260909_at AT1G02670 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.161 -0.009
37 263370_at AT2G20500 unknown 0.158 -0.024
38 250389_at AT5G11320 AtYUC4, YUC4, YUCCA4 0.153 -0.032
39 261641_at AT1G27670 unknown 0.152 -0.022
40 267554_at AT2G32790 [Ubiquitin-conjugating enzyme family protein] 0.146 0.087
41 248505_at AT5G50360 unknown 0.145 0.001
42 248706_at AT5G48530 unknown 0.145 0.004
43 260044_at AT1G73655 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.143 0.030
44 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.142 0.533
45 264510_at AT1G09530 PAP3, PHYTOCHROME-ASSOCIATED PROTEIN 3, PIF3, phytochrome interacting factor 3, POC1, PHOTOCURRENT 1 0.141 0.067
46 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.139 0.263
47 260983_at AT1G53560 [Ribosomal protein L18ae family] 0.138 0.148
48 263330_at AT2G15320 [Leucine-rich repeat (LRR) family protein] 0.138 -0.032
49 256516_at AT1G66150 TMK1, transmembrane kinase 1 0.134 0.007
50 245567_at AT4G14630 GLP9, germin-like protein 9 -0.613 0.480
51 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B -0.554 -0.026
52 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.543 -0.424
53 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.488 0.032
54 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.467 0.126
55 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.438 0.293
56 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 -0.438 -0.259
57 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.434 0.170
58 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 -0.432 -0.199
59 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.420 -0.458
60 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] -0.420 0.021
61 249566_at AT5G38450 CYP735A1, cytochrome P450, family 735, subfamily A, polypeptide 1 -0.389 -0.126
62 261804_at AT1G30530 UGT78D1, UDP-glucosyl transferase 78D1 -0.383 -0.151
63 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.375 -0.045
64 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.344 -0.197
65 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 -0.337 0.127
66 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.328 0.095
67 256875_at AT3G26330 CYP71B37, cytochrome P450, family 71, subfamily B, polypeptide 37 -0.323 0.018
68 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] -0.313 0.004
69 260656_at AT1G19380 unknown -0.311 0.099
70 251335_at AT3G61400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.310 -0.141
71 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.308 -0.243
72 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] -0.301 0.200
73 263436_at AT2G28690 unknown -0.293 -0.147
74 251368_at AT3G61380 TRM14, TON1 Recruiting Motif 14 -0.276 -0.120
75 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 -0.275 -0.073
76 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.272 -0.041
77 252924_at AT4G39070 BBX20, B-box domain protein 20, BZS1, BZS1 -0.269 0.018
78 253215_at AT4G34950 [Major facilitator superfamily protein] -0.266 0.039
79 256529_at AT1G33260 [Protein kinase superfamily protein] -0.248 0.153
80 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] -0.222 0.063
81 252205_at AT3G50350 unknown -0.220 0.043
82 249561_at AT5G38340 [Disease resistance protein (TIR-NBS-LRR class) family] -0.217 -0.097
83 245886_at AT5G09510 [Ribosomal protein S19 family protein] -0.216 -0.080
84 246839_at AT5G26720 unknown -0.200 0.012
85 251513_at AT3G59220 ATPIRIN1, PRN, pirin, PRN1 -0.198 -0.022
86 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.198 0.164
87 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.195 0.373
88 246108_at AT5G28630 [glycine-rich protein] -0.192 0.204
89 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.191 -0.092
90 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.188 0.033
91 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.186 -0.252
92 263714_at AT2G20610 ALF1, ABERRANT LATERAL ROOT FORMATION 1, HLS3, HOOKLESS 3, RTY, ROOTY, RTY1, ROOTY 1, SUR1, SUPERROOT 1 -0.185 -0.022
93 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 -0.183 0.049
94 249779_at AT5G24230 [Lipase class 3-related protein] -0.182 -0.125
95 260549_at AT2G43535 [Scorpion toxin-like knottin superfamily protein] -0.180 -0.115
96 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] -0.178 0.029
97 260806_at AT1G78260 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.177 -0.361