4.0:Information of module
Col-0 4C
In comparison with Imbibed 3 h (seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.436e-05
GO:1901700 response to oxygen-containing compound BP 2.317e-05
GO:0010243 response to organonitrogen compound BP 2.895e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.449e-21
GO:0006412 translation BP 4.172e-17
GO:0009451 RNA modification BP 2.471e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 4C		 Log2 signal ratio
Imbibed 3 h (seed)
1 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.571 0.109
2 248959_at AT5G45630 unknown 0.559 -1.061
3 251336_at AT3G61190 BAP1, BON association protein 1 0.474 0.229
4 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.409 0.811
5 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.395 0.153
6 247856_at AT5G58300 [Leucine-rich repeat protein kinase family protein] 0.356 0.007
7 261405_at AT1G18740 unknown 0.342 0.219
8 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 0.342 -0.058
9 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.332 -0.064
10 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.311 -0.034
11 257939_at AT3G19930 ATSTP4, SUGAR TRANSPORTER 4, STP4, sugar transporter 4 0.291 0.041
12 257607_at AT3G13880 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.270 -0.075
13 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.262 0.297
14 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.262 -0.170
15 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 0.259 -0.178
16 247142_at AT5G65570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.259 -0.190
17 262150_at AT1G52520 FRS6, FAR1-related sequence 6 0.259 -0.231
18 256190_at AT1G30100 ATNCED5, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5, NCED5, nine-cis-epoxycarotenoid dioxygenase 5 0.239 -0.393
19 247707_at AT5G59450 [GRAS family transcription factor] 0.238 0.081
20 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.232 0.085
21 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 0.229 -0.007
22 250686_at AT5G06680 ATGCP3, ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, ATSPC98, SPINDLE POLE BODY COMPONENT 98, GCP3, GAMMA TUBULIN COMPLEX PROTEIN 3, SPC98, spindle pole body component 98 0.228 0.010
23 261134_at AT1G19630 CYP722A1, cytochrome P450, family 722, subfamily A, polypeptide 1 0.220 -0.314
24 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.211 -0.092
25 245585_at AT4G14970 unknown 0.209 0.121
26 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.206 0.078
27 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.201 -0.546
28 249624_at AT5G37570 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.200 0.150
29 247384_at AT5G63370 CDKG1, cyclin-dependent kinase G1 0.198 0.181
30 256508_at AT1G75140 unknown 0.193 0.060
31 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.191 0.210
32 260686_at AT1G17620 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.191 0.093
33 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.190 -0.186
34 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.184 0.250
35 261131_at AT1G19835 unknown 0.179 -0.114
36 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.176 -0.531
37 248714_at AT5G48140 [Pectin lyase-like superfamily protein] 0.176 -0.070
38 254214_at AT4G23640 ATKT3, KUP4, TRH1, TINY ROOT HAIR 1 0.172 -0.043
39 247177_at AT5G65300 unknown 0.172 0.272
40 255665_at AT4G00450 CCT, CENTER CITY, CRP, CRYPTIC PRECOCIOUS, MED12, mediator 12 0.172 -0.071
41 250563_at AT5G08050 unknown 0.171 0.164
42 249892_at AT5G22600 [FBD / Leucine Rich Repeat domains containing protein] 0.171 -0.090
43 262800_at AT1G20960 emb1507, embryo defective 1507 0.169 -0.026
44 265567_at AT2G05580 [Glycine-rich protein family] 0.168 -0.125
45 255062_at AT4G08940 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.163 0.299
46 260675_at AT1G19430 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.162 -0.088
47 262910_at AT1G59710 unknown 0.159 0.598
48 244935_at ATCG01090 NDHI 0.157 -0.182
49 258444_at AT3G22380 TIC, TIME FOR COFFEE 0.156 -0.021
50 254349_at AT4G22250 [RING/U-box superfamily protein] 0.156 0.075
51 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 0.156 0.038
52 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.155 0.049
53 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.921 0.412
54 253298_at AT4G33560 [Wound-responsive family protein] -0.737 0.336
55 252348_at AT3G48140 [B12D protein] -0.733 0.607
56 258262_at AT3G15770 unknown -0.662 0.951
57 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 -0.554 0.827
58 265621_at AT2G27300 ANAC040, Arabidopsis NAC domain containing protein 40, NTL8, NTM1-like 8 -0.550 0.913
59 246132_at AT5G20850 ATRAD51, RAD51 -0.513 0.713
60 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a -0.476 0.724
61 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 -0.463 0.509
62 257824_at AT3G25290 [Auxin-responsive family protein] -0.456 0.024
63 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.426 0.659
64 258024_at AT3G19360 [Zinc finger (CCCH-type) family protein] -0.422 0.451
65 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 -0.413 0.372
66 252022_at AT3G52930 AtFBA8, FBA8, fructose-bisphosphate aldolase 8 -0.390 0.456
67 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 -0.367 0.315
68 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.361 0.438
69 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] -0.354 0.540
70 266461_at AT2G47730 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, ATGSTF8, Arabidopsis thaliana glutathione S-transferase phi 8, GST6, GSTF8, glutathione S-transferase phi 8 -0.354 0.341
71 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.345 0.335
72 258679_at AT3G08590 iPGAM2, 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2 -0.321 0.319
73 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 -0.310 0.318
74 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.307 0.524
75 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.290 0.186
76 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.289 -0.061
77 257894_at AT3G17100 AIF3, ATBS1 Interacting Factor 3 -0.286 0.147
78 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.277 0.304
79 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 -0.274 0.410
80 262072_at AT1G59590 ZCF37 -0.260 0.196
81 245424_at AT4G17505 unknown -0.259 -0.096
82 259586_at AT1G28100 unknown -0.244 0.080
83 245096_at AT2G40880 ATCYSA, cystatin A, CYSA, cystatin A, FL3-27 -0.243 1.010
84 266928_at AT2G45790 ATPMM, PHOSPHOMANNOMUTASE, PMM, phosphomannomutase -0.231 0.153
85 253013_at AT4G37910 mtHsc70-1, mitochondrial heat shock protein 70-1 -0.230 0.277
86 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.227 0.045
87 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] -0.225 -0.084
88 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.219 0.456
89 253305_at AT4G33666 unknown -0.219 0.141
90 256549_at AT3G31310 unknown -0.212 0.019
91 245313_at AT4G15420 [Ubiquitin fusion degradation UFD1 family protein] -0.207 0.158
92 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.206 0.232
93 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 -0.202 0.333
94 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.194 0.441
95 245270_at AT4G14960 TUA6, Tubulin alpha-6 -0.191 0.215
96 262329_at AT1G64090 RTNLB3, Reticulan like protein B3 -0.188 0.475
97 254505_at AT4G19985 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.183 0.075
98 262475_at AT1G50340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.181 -0.009
99 266024_at AT2G05950 unknown -0.180 -0.013
100 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -0.180 0.368
101 258799_at AT3G04770 RPSAb, 40s ribosomal protein SA B -0.179 0.467
102 260147_at AT1G52790 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.177 -0.004
103 247927_at AT5G57310 unknown -0.174 0.074