4.0:Information of module
Col-0 4C
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.436e-05
GO:1901700 response to oxygen-containing compound BP 2.317e-05
GO:0010243 response to organonitrogen compound BP 2.895e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.449e-21
GO:0006412 translation BP 4.172e-17
GO:0009451 RNA modification BP 2.471e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 4C		 Log2 signal ratio
Leafminer damaged seedlings
1 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.571 1.097
2 248959_at AT5G45630 unknown 0.559 0.353
3 251336_at AT3G61190 BAP1, BON association protein 1 0.474 0.828
4 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.409 0.146
5 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.395 0.686
6 247856_at AT5G58300 [Leucine-rich repeat protein kinase family protein] 0.356 -0.317
7 261405_at AT1G18740 unknown 0.342 0.238
8 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 0.342 -0.328
9 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.332 0.254
10 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.311 0.507
11 257939_at AT3G19930 ATSTP4, SUGAR TRANSPORTER 4, STP4, sugar transporter 4 0.291 0.089
12 257607_at AT3G13880 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.270 0.020
13 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.262 0.001
14 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.262 -0.160
15 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 0.259 -0.089
16 247142_at AT5G65570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.259 0.057
17 262150_at AT1G52520 FRS6, FAR1-related sequence 6 0.259 -0.178
18 256190_at AT1G30100 ATNCED5, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5, NCED5, nine-cis-epoxycarotenoid dioxygenase 5 0.239 -0.024
19 247707_at AT5G59450 [GRAS family transcription factor] 0.238 0.089
20 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.232 0.184
21 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 0.229 0.218
22 250686_at AT5G06680 ATGCP3, ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, ATSPC98, SPINDLE POLE BODY COMPONENT 98, GCP3, GAMMA TUBULIN COMPLEX PROTEIN 3, SPC98, spindle pole body component 98 0.228 -0.202
23 261134_at AT1G19630 CYP722A1, cytochrome P450, family 722, subfamily A, polypeptide 1 0.220 -0.108
24 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.211 1.044
25 245585_at AT4G14970 unknown 0.209 -0.048
26 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.206 0.287
27 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.201 0.050
28 249624_at AT5G37570 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.200 -0.014
29 247384_at AT5G63370 CDKG1, cyclin-dependent kinase G1 0.198 0.162
30 256508_at AT1G75140 unknown 0.193 0.117
31 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.191 0.841
32 260686_at AT1G17620 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.191 0.187
33 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.190 0.098
34 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.184 -0.317
35 261131_at AT1G19835 unknown 0.179 -0.320
36 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.176 -0.218
37 248714_at AT5G48140 [Pectin lyase-like superfamily protein] 0.176 0.004
38 254214_at AT4G23640 ATKT3, KUP4, TRH1, TINY ROOT HAIR 1 0.172 -0.049
39 247177_at AT5G65300 unknown 0.172 0.785
40 255665_at AT4G00450 CCT, CENTER CITY, CRP, CRYPTIC PRECOCIOUS, MED12, mediator 12 0.172 -0.059
41 250563_at AT5G08050 unknown 0.171 -0.160
42 249892_at AT5G22600 [FBD / Leucine Rich Repeat domains containing protein] 0.171 -0.035
43 262800_at AT1G20960 emb1507, embryo defective 1507 0.169 -0.063
44 265567_at AT2G05580 [Glycine-rich protein family] 0.168 0.030
45 255062_at AT4G08940 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.163 -0.152
46 260675_at AT1G19430 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.162 -0.147
47 262910_at AT1G59710 unknown 0.159 0.084
48 244935_at ATCG01090 NDHI 0.157 -0.049
49 258444_at AT3G22380 TIC, TIME FOR COFFEE 0.156 -0.014
50 254349_at AT4G22250 [RING/U-box superfamily protein] 0.156 0.098
51 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 0.156 0.187
52 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.155 0.612
53 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.921 0.024
54 253298_at AT4G33560 [Wound-responsive family protein] -0.737 -0.020
55 252348_at AT3G48140 [B12D protein] -0.733 0.016
56 258262_at AT3G15770 unknown -0.662 0.063
57 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 -0.554 -0.264
58 265621_at AT2G27300 ANAC040, Arabidopsis NAC domain containing protein 40, NTL8, NTM1-like 8 -0.550 0.034
59 246132_at AT5G20850 ATRAD51, RAD51 -0.513 -0.046
60 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a -0.476 0.044
61 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 -0.463 0.111
62 257824_at AT3G25290 [Auxin-responsive family protein] -0.456 0.050
63 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.426 -0.687
64 258024_at AT3G19360 [Zinc finger (CCCH-type) family protein] -0.422 0.028
65 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 -0.413 0.649
66 252022_at AT3G52930 AtFBA8, FBA8, fructose-bisphosphate aldolase 8 -0.390 -0.031
67 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 -0.367 0.174
68 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.361 0.436
69 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] -0.354 -0.086
70 266461_at AT2G47730 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, ATGSTF8, Arabidopsis thaliana glutathione S-transferase phi 8, GST6, GSTF8, glutathione S-transferase phi 8 -0.354 -0.024
71 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.345 0.048
72 258679_at AT3G08590 iPGAM2, 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2 -0.321 -0.113
73 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 -0.310 0.010
74 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.307 0.118
75 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.290 0.014
76 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.289 -0.333
77 257894_at AT3G17100 AIF3, ATBS1 Interacting Factor 3 -0.286 0.017
78 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.277 -0.330
79 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 -0.274 0.339
80 262072_at AT1G59590 ZCF37 -0.260 0.231
81 245424_at AT4G17505 unknown -0.259 0.029
82 259586_at AT1G28100 unknown -0.244 -0.055
83 245096_at AT2G40880 ATCYSA, cystatin A, CYSA, cystatin A, FL3-27 -0.243 0.057
84 266928_at AT2G45790 ATPMM, PHOSPHOMANNOMUTASE, PMM, phosphomannomutase -0.231 -0.012
85 253013_at AT4G37910 mtHsc70-1, mitochondrial heat shock protein 70-1 -0.230 -0.031
86 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.227 -0.046
87 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] -0.225 0.715
88 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.219 0.008
89 253305_at AT4G33666 unknown -0.219 -0.156
90 256549_at AT3G31310 unknown -0.212 -0.045
91 245313_at AT4G15420 [Ubiquitin fusion degradation UFD1 family protein] -0.207 0.043
92 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.206 -0.048
93 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 -0.202 -0.095
94 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.194 0.939
95 245270_at AT4G14960 TUA6, Tubulin alpha-6 -0.191 -0.079
96 262329_at AT1G64090 RTNLB3, Reticulan like protein B3 -0.188 -0.006
97 254505_at AT4G19985 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.183 -0.147
98 262475_at AT1G50340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.181 -0.017
99 266024_at AT2G05950 unknown -0.180 -0.026
100 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -0.180 -0.014
101 258799_at AT3G04770 RPSAb, 40s ribosomal protein SA B -0.179 -0.014
102 260147_at AT1G52790 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.177 0.040
103 247927_at AT5G57310 unknown -0.174 0.065