4.0:Information of module
Col-0 4C
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.436e-05
GO:1901700 response to oxygen-containing compound BP 2.317e-05
GO:0010243 response to organonitrogen compound BP 2.895e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.449e-21
GO:0006412 translation BP 4.172e-17
GO:0009451 RNA modification BP 2.471e-16
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 4C		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 253259_at AT4G34410 RRTF1, redox responsive transcription factor 1 0.571 -0.186
2 248959_at AT5G45630 unknown 0.559 -0.183
3 251336_at AT3G61190 BAP1, BON association protein 1 0.474 0.181
4 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 0.409 0.030
5 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.395 -0.080
6 247856_at AT5G58300 [Leucine-rich repeat protein kinase family protein] 0.356 -0.132
7 261405_at AT1G18740 unknown 0.342 0.036
8 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 0.342 -0.215
9 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.332 -0.248
10 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.311 -0.050
11 257939_at AT3G19930 ATSTP4, SUGAR TRANSPORTER 4, STP4, sugar transporter 4 0.291 0.183
12 257607_at AT3G13880 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.270 -0.135
13 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.262 -0.024
14 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] 0.262 0.143
15 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 0.259 -0.034
16 247142_at AT5G65570 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.259 -0.016
17 262150_at AT1G52520 FRS6, FAR1-related sequence 6 0.259 -0.154
18 256190_at AT1G30100 ATNCED5, NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5, NCED5, nine-cis-epoxycarotenoid dioxygenase 5 0.239 -0.087
19 247707_at AT5G59450 [GRAS family transcription factor] 0.238 0.021
20 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.232 -0.181
21 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 0.229 0.069
22 250686_at AT5G06680 ATGCP3, ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, ATSPC98, SPINDLE POLE BODY COMPONENT 98, GCP3, GAMMA TUBULIN COMPLEX PROTEIN 3, SPC98, spindle pole body component 98 0.228 0.126
23 261134_at AT1G19630 CYP722A1, cytochrome P450, family 722, subfamily A, polypeptide 1 0.220 0.030
24 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.211 -0.050
25 245585_at AT4G14970 unknown 0.209 0.012
26 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.206 -0.022
27 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.201 -0.181
28 249624_at AT5G37570 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.200 0.164
29 247384_at AT5G63370 CDKG1, cyclin-dependent kinase G1 0.198 0.029
30 256508_at AT1G75140 unknown 0.193 -0.076
31 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.191 0.176
32 260686_at AT1G17620 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.191 0.008
33 254014_at AT4G26120 [Ankyrin repeat family protein / BTB/POZ domain-containing protein] 0.190 0.384
34 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.184 -0.114
35 261131_at AT1G19835 unknown 0.179 -0.088
36 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 0.176 0.012
37 248714_at AT5G48140 [Pectin lyase-like superfamily protein] 0.176 0.085
38 254214_at AT4G23640 ATKT3, KUP4, TRH1, TINY ROOT HAIR 1 0.172 0.054
39 247177_at AT5G65300 unknown 0.172 -0.055
40 255665_at AT4G00450 CCT, CENTER CITY, CRP, CRYPTIC PRECOCIOUS, MED12, mediator 12 0.172 0.026
41 250563_at AT5G08050 unknown 0.171 0.093
42 249892_at AT5G22600 [FBD / Leucine Rich Repeat domains containing protein] 0.171 0.056
43 262800_at AT1G20960 emb1507, embryo defective 1507 0.169 0.153
44 265567_at AT2G05580 [Glycine-rich protein family] 0.168 0.017
45 255062_at AT4G08940 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.163 -0.266
46 260675_at AT1G19430 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.162 -0.308
47 262910_at AT1G59710 unknown 0.159 -0.109
48 244935_at ATCG01090 NDHI 0.157 0.245
49 258444_at AT3G22380 TIC, TIME FOR COFFEE 0.156 -0.219
50 254349_at AT4G22250 [RING/U-box superfamily protein] 0.156 -0.054
51 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 0.156 0.014
52 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.155 -0.044
53 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.921 -0.079
54 253298_at AT4G33560 [Wound-responsive family protein] -0.737 0.133
55 252348_at AT3G48140 [B12D protein] -0.733 0.027
56 258262_at AT3G15770 unknown -0.662 0.101
57 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 -0.554 -0.064
58 265621_at AT2G27300 ANAC040, Arabidopsis NAC domain containing protein 40, NTL8, NTM1-like 8 -0.550 -0.128
59 246132_at AT5G20850 ATRAD51, RAD51 -0.513 -0.107
60 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a -0.476 0.328
61 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 -0.463 0.044
62 257824_at AT3G25290 [Auxin-responsive family protein] -0.456 -0.052
63 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.426 -0.135
64 258024_at AT3G19360 [Zinc finger (CCCH-type) family protein] -0.422 0.312
65 250580_at AT5G07440 GDH2, glutamate dehydrogenase 2 -0.413 -0.148
66 252022_at AT3G52930 AtFBA8, FBA8, fructose-bisphosphate aldolase 8 -0.390 -0.072
67 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 -0.367 0.051
68 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.361 0.128
69 259503_at AT1G15870 [Mitochondrial glycoprotein family protein] -0.354 -0.070
70 266461_at AT2G47730 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, ATGSTF8, Arabidopsis thaliana glutathione S-transferase phi 8, GST6, GSTF8, glutathione S-transferase phi 8 -0.354 0.168
71 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.345 0.046
72 258679_at AT3G08590 iPGAM2, 2,3-biphosphoglycerate-independent phosphoglycerate mutase 2 -0.321 -0.104
73 252024_at AT3G52880 ATMDAR1, monodehydroascorbate reductase 1, MDAR1, monodehydroascorbate reductase 1 -0.310 0.015
74 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] -0.307 -0.224
75 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.290 -0.046
76 249073_at AT5G44020 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.289 -0.048
77 257894_at AT3G17100 AIF3, ATBS1 Interacting Factor 3 -0.286 -0.033
78 246919_at AT5G25460 DGR2, DUF642 L-GalL responsive gene 2 -0.277 0.070
79 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 -0.274 -0.018
80 262072_at AT1G59590 ZCF37 -0.260 0.043
81 245424_at AT4G17505 unknown -0.259 -0.000
82 259586_at AT1G28100 unknown -0.244 -0.128
83 245096_at AT2G40880 ATCYSA, cystatin A, CYSA, cystatin A, FL3-27 -0.243 0.171
84 266928_at AT2G45790 ATPMM, PHOSPHOMANNOMUTASE, PMM, phosphomannomutase -0.231 0.091
85 253013_at AT4G37910 mtHsc70-1, mitochondrial heat shock protein 70-1 -0.230 0.008
86 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.227 0.039
87 264467_at AT1G10140 [Uncharacterised conserved protein UCP031279] -0.225 0.028
88 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.219 -0.027
89 253305_at AT4G33666 unknown -0.219 -0.103
90 256549_at AT3G31310 unknown -0.212 0.029
91 245313_at AT4G15420 [Ubiquitin fusion degradation UFD1 family protein] -0.207 0.115
92 251355_at AT3G61100 [Putative endonuclease or glycosyl hydrolase] -0.206 -0.057
93 251152_at AT3G63130 ATRANGAP1, RAN GTPASE-ACTIVATING PROTEIN 1, RANGAP1, RAN GTPase activating protein 1 -0.202 0.042
94 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.194 0.086
95 245270_at AT4G14960 TUA6, Tubulin alpha-6 -0.191 -0.011
96 262329_at AT1G64090 RTNLB3, Reticulan like protein B3 -0.188 -0.172
97 254505_at AT4G19985 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.183 -0.049
98 262475_at AT1G50340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.181 -0.117
99 266024_at AT2G05950 unknown -0.180 -0.105
100 265856_at AT2G42430 ASL18, ASYMMETRIC LEAVES2-LIKE 18, LBD16, lateral organ boundaries-domain 16 -0.180 -0.052
101 258799_at AT3G04770 RPSAb, 40s ribosomal protein SA B -0.179 0.416
102 260147_at AT1G52790 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.177 -0.053
103 247927_at AT5G57310 unknown -0.174 -0.079