4.0:Information of module
1 h Light Total RNA
In comparison with Dark 2day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0065007 biological regulation BP 4.531e-06
GO:0006066 alcohol metabolic process BP 7.081e-06
GO:0019751 polyol metabolic process BP 7.648e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 1.497e-29
GO:1901700 response to oxygen-containing compound BP 5.167e-29
GO:0009719 response to endogenous stimulus BP 4.426e-26
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
1 h Light Total RNA		 Log2 signal ratio
Dark 2day wt
1 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.560 2.651
2 251058_at AT5G01790 unknown 0.396 -3.537
3 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] 0.396 -3.173
4 261247_at AT1G20070 unknown 0.365 -2.111
5 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.357 -4.137
6 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 0.350 -1.735
7 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 0.325 -1.401
8 246986_at AT5G67280 RLK, receptor-like kinase 0.320 -2.171
9 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.316 -3.553
10 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.315 -4.098
11 257057_at AT3G15310 unknown 0.292 -8.687
12 253247_at AT4G34610 BLH6, BEL1-like homeodomain 6 0.291 -4.210
13 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.288 -7.541
14 263739_at AT2G21320 BBX18, B-box domain protein 18 0.279 -3.755
15 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.274 -1.735
16 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.263 -2.727
17 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 0.257 -2.075
18 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.255 -2.100
19 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 0.248 -2.645
20 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 0.248 -3.389
21 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] 0.241 -4.339
22 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.239 -3.154
23 257297_at AT3G28040 [Leucine-rich receptor-like protein kinase family protein] 0.236 -0.992
24 245758_at AT1G32240 KAN2, KANADI 2 0.236 -0.147
25 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.236 -8.717
26 257267_at AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 0.229 -1.510
27 260041_at AT1G68780 [RNI-like superfamily protein] 0.228 -4.254
28 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 0.227 -0.151
29 250985_at AT5G02830 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.223 -2.078
30 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.221 -4.472
31 263782_at AT2G46380 unknown 0.213 -1.326
32 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.211 -0.445
33 253021_at AT4G38050 [Xanthine/uracil permease family protein] 0.211 -1.065
34 247977_at AT5G56850 unknown 0.211 -4.396
35 254693_at AT4G17880 MYC4 0.211 -2.077
36 256049_at AT1G07010 AtSLP1, SLP1, Shewenella-like protein phosphatase 1 0.210 -3.469
37 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 0.210 -0.226
38 247406_at AT5G62920 ARR6, response regulator 6 0.202 -1.158
39 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.201 -3.832
40 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.197 -1.215
41 248291_at AT5G53020 [Ribonuclease P protein subunit P38-related] 0.195 0.097
42 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] 0.191 -6.632
43 267221_at AT2G02480 STI, STICHEL 0.191 -2.002
44 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] 0.189 -4.913
45 264583_at AT1G05170 [Galactosyltransferase family protein] 0.187 -1.392
46 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 0.186 -3.975
47 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 0.184 -2.649
48 264057_at AT2G28550 RAP2.7, related to AP2.7, TOE1, TARGET OF EARLY ACTIVATION TAGGED (EAT) 1 0.179 -0.745
49 253495_at AT4G31850 PGR3, proton gradient regulation 3 0.179 -0.374
50 248028_at AT5G55620 unknown 0.179 -5.017
51 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 0.177 -3.974
52 256210_at AT1G50950 [INVOLVED IN: cell redox homeostasis] 0.177 1.884
53 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.175 0.207
54 256093_at AT1G20823 [RING/U-box superfamily protein] 0.175 -2.534
55 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] 0.174 -2.471
56 247643_at AT5G60450 ARF4, auxin response factor 4 0.170 -0.664
57 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.168 -2.261
58 245302_at AT4G17695 KAN3, KANADI 3 0.167 0.614
59 252619_at AT3G45210 unknown 0.165 -3.005
60 267177_at AT2G37580 [RING/U-box superfamily protein] 0.162 -0.369
61 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.161 -6.173
62 259528_at AT1G12330 unknown 0.161 -0.181
63 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.707 -0.042
64 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 -0.650 -3.298
65 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.648 4.744
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.567 2.181
67 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 -0.564 5.607
68 266800_at AT2G22880 [VQ motif-containing protein] -0.553 0.899
69 255568_at AT4G01250 AtWRKY22, WRKY22 -0.534 2.469
70 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 -0.518 1.407
71 253322_at AT4G33980 unknown -0.482 10.571
72 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] -0.475 3.219
73 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.463 -4.904
74 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.433 -1.942
75 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.418 -3.975
76 264788_at AT2G17880 DJC24, DNA J protein C24 -0.418 1.429
77 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.415 -0.475
78 248432_at AT5G51390 unknown -0.401 2.390
79 246926_at AT5G25240 unknown -0.381 1.260
80 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.377 -4.085
81 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] -0.353 0.708
82 265732_at AT2G01300 unknown -0.353 0.990
83 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.340 -0.236
84 266140_at AT2G28120 [Major facilitator superfamily protein] -0.340 2.097
85 249234_at AT5G42200 [RING/U-box superfamily protein] -0.333 2.906
86 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.330 2.226
87 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.327 3.853
88 261658_at AT1G50040 unknown -0.314 2.420
89 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.313 3.430
90 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.312 2.141
91 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.307 2.028
92 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.306 4.661
93 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.306 2.136
94 252483_at AT3G46600 [GRAS family transcription factor] -0.304 1.177
95 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 -0.304 2.378
96 249918_at AT5G19240 [Glycoprotein membrane precursor GPI-anchored] -0.302 -6.050
97 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 -0.295 2.070
98 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.291 -2.566
99 247137_at AT5G66210 CPK28, calcium-dependent protein kinase 28 -0.289 0.592
100 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.286 -2.582
101 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.282 -2.662
102 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.281 2.636
103 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.281 2.654
104 261938_at AT1G22510 [FUNCTIONS IN: zinc ion binding] -0.279 -0.936
105 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.278 1.796
106 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.277 -0.754
107 259015_at AT3G07350 unknown -0.277 1.889
108 267230_at AT2G44080 ARL, ARGOS-like -0.274 1.567
109 252250_at AT3G49790 [Carbohydrate-binding protein] -0.270 3.214
110 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 -0.270 6.316
111 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.269 2.228
112 261641_at AT1G27670 unknown -0.267 5.151
113 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase -0.266 3.302
114 264379_at AT2G25200 unknown -0.262 1.277
115 261395_at AT1G79700 WRI4, WRINKLED 4 -0.258 2.817
116 266259_at AT2G27830 unknown -0.257 3.775
117 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 -0.251 3.387
118 247708_at AT5G59550 unknown -0.250 0.653
119 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.249 4.999
120 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 -0.249 -0.887
121 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 -0.246 1.421
122 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.246 6.464
123 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.246 6.758