4.0:Information of module
1 h Light Total RNA
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0065007 biological regulation BP 4.531e-06
GO:0006066 alcohol metabolic process BP 7.081e-06
GO:0019751 polyol metabolic process BP 7.648e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 1.497e-29
GO:1901700 response to oxygen-containing compound BP 5.167e-29
GO:0009719 response to endogenous stimulus BP 4.426e-26
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
1 h Light Total RNA		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.560 0.185
2 251058_at AT5G01790 unknown 0.396 -0.498
3 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] 0.396 -0.658
4 261247_at AT1G20070 unknown 0.365 -0.029
5 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 0.357 -0.284
6 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 0.350 -0.611
7 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 0.325 -0.283
8 246986_at AT5G67280 RLK, receptor-like kinase 0.320 -0.254
9 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.316 -0.402
10 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] 0.315 -0.209
11 257057_at AT3G15310 unknown 0.292 -0.467
12 253247_at AT4G34610 BLH6, BEL1-like homeodomain 6 0.291 -0.541
13 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.288 -0.022
14 263739_at AT2G21320 BBX18, B-box domain protein 18 0.279 -0.598
15 252429_at AT3G47500 CDF3, cycling DOF factor 3 0.274 -0.180
16 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.263 -0.691
17 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 0.257 -0.453
18 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.255 -0.641
19 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 0.248 -0.580
20 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 0.248 -0.211
21 258409_at AT3G17640 [Leucine-rich repeat (LRR) family protein] 0.241 -0.415
22 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.239 -0.251
23 257297_at AT3G28040 [Leucine-rich receptor-like protein kinase family protein] 0.236 -0.286
24 245758_at AT1G32240 KAN2, KANADI 2 0.236 -0.213
25 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.236 -0.415
26 257267_at AT3G15030 MEE35, maternal effect embryo arrest 35, TCP4, TCP family transcription factor 4 0.229 -0.289
27 260041_at AT1G68780 [RNI-like superfamily protein] 0.228 -0.803
28 256622_at AT3G28920 AtHB34, homeobox protein 34, HB34, homeobox protein 34, ZHD9, ZINC FINGER HOMEODOMAIN 9 0.227 -0.187
29 250985_at AT5G02830 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.223 -0.438
30 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.221 -0.324
31 263782_at AT2G46380 unknown 0.213 -0.332
32 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 0.211 -0.003
33 253021_at AT4G38050 [Xanthine/uracil permease family protein] 0.211 0.159
34 247977_at AT5G56850 unknown 0.211 -0.691
35 254693_at AT4G17880 MYC4 0.211 -0.351
36 256049_at AT1G07010 AtSLP1, SLP1, Shewenella-like protein phosphatase 1 0.210 -0.616
37 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 0.210 -0.608
38 247406_at AT5G62920 ARR6, response regulator 6 0.202 -0.141
39 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.201 -0.194
40 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.197 -0.221
41 248291_at AT5G53020 [Ribonuclease P protein subunit P38-related] 0.195 -0.352
42 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] 0.191 -0.739
43 267221_at AT2G02480 STI, STICHEL 0.191 -0.026
44 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] 0.189 -0.514
45 264583_at AT1G05170 [Galactosyltransferase family protein] 0.187 -0.259
46 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 0.186 -0.705
47 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 0.184 -0.143
48 264057_at AT2G28550 RAP2.7, related to AP2.7, TOE1, TARGET OF EARLY ACTIVATION TAGGED (EAT) 1 0.179 -0.225
49 253495_at AT4G31850 PGR3, proton gradient regulation 3 0.179 -0.459
50 248028_at AT5G55620 unknown 0.179 -0.558
51 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 0.177 -0.896
52 256210_at AT1G50950 [INVOLVED IN: cell redox homeostasis] 0.177 -0.056
53 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.175 -0.534
54 256093_at AT1G20823 [RING/U-box superfamily protein] 0.175 -0.117
55 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] 0.174 0.029
56 247643_at AT5G60450 ARF4, auxin response factor 4 0.170 -0.168
57 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.168 -0.270
58 245302_at AT4G17695 KAN3, KANADI 3 0.167 -0.095
59 252619_at AT3G45210 unknown 0.165 -0.230
60 267177_at AT2G37580 [RING/U-box superfamily protein] 0.162 0.089
61 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 0.161 -0.059
62 259528_at AT1G12330 unknown 0.161 -0.314
63 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.707 -0.346
64 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 -0.650 0.241
65 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.648 0.688
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 -0.567 0.577
67 250182_at AT5G14470 AtGALK2, GALK2, galactokinase 2 -0.564 0.082
68 266800_at AT2G22880 [VQ motif-containing protein] -0.553 0.513
69 255568_at AT4G01250 AtWRKY22, WRKY22 -0.534 -0.088
70 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 -0.518 -0.462
71 253322_at AT4G33980 unknown -0.482 0.318
72 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] -0.475 0.018
73 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.463 -0.365
74 260856_at AT1G21910 DREB26, dehydration response element-binding protein 26 -0.433 0.190
75 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.418 0.364
76 264788_at AT2G17880 DJC24, DNA J protein C24 -0.418 -0.129
77 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.415 0.284
78 248432_at AT5G51390 unknown -0.401 0.048
79 246926_at AT5G25240 unknown -0.381 -0.148
80 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.377 -0.046
81 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] -0.353 -0.094
82 265732_at AT2G01300 unknown -0.353 -0.196
83 251745_at AT3G55980 ATSZF1, SZF1, salt-inducible zinc finger 1 -0.340 -0.369
84 266140_at AT2G28120 [Major facilitator superfamily protein] -0.340 0.435
85 249234_at AT5G42200 [RING/U-box superfamily protein] -0.333 0.009
86 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 -0.330 -0.043
87 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] -0.327 -0.058
88 261658_at AT1G50040 unknown -0.314 0.095
89 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.313 0.671
90 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.312 0.314
91 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.307 0.343
92 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.306 0.214
93 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.306 0.313
94 252483_at AT3G46600 [GRAS family transcription factor] -0.304 -0.134
95 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 -0.304 0.170
96 249918_at AT5G19240 [Glycoprotein membrane precursor GPI-anchored] -0.302 -0.228
97 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 -0.295 0.172
98 260914_at AT1G02640 ATBXL2, BETA-XYLOSIDASE 2, BXL2, beta-xylosidase 2 -0.291 -0.151
99 247137_at AT5G66210 CPK28, calcium-dependent protein kinase 28 -0.289 0.025
100 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.286 0.271
101 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.282 -0.106
102 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.281 -0.192
103 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] -0.281 -0.104
104 261938_at AT1G22510 [FUNCTIONS IN: zinc ion binding] -0.279 0.160
105 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.278 0.006
106 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.277 0.421
107 259015_at AT3G07350 unknown -0.277 -0.071
108 267230_at AT2G44080 ARL, ARGOS-like -0.274 0.312
109 252250_at AT3G49790 [Carbohydrate-binding protein] -0.270 -0.148
110 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 -0.270 0.155
111 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.269 0.564
112 261641_at AT1G27670 unknown -0.267 0.539
113 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase -0.266 0.191
114 264379_at AT2G25200 unknown -0.262 0.151
115 261395_at AT1G79700 WRI4, WRINKLED 4 -0.258 -0.064
116 266259_at AT2G27830 unknown -0.257 0.017
117 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 -0.251 -0.032
118 247708_at AT5G59550 unknown -0.250 -0.013
119 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.249 0.221
120 255753_at AT1G18570 AtMYB51, myb domain protein 51, BW51A, BW51B, HIG1, HIGH INDOLIC GLUCOSINOLATE 1, MYB51, myb domain protein 51 -0.249 0.001
121 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 -0.246 0.151
122 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.246 0.286
123 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.246 0.083