4.0:Information of module
rrd1 IBA
In comparison with RGA-GR-DEX help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045491 xylan metabolic process BP 1.195e-07
GO:0010410 hemicellulose metabolic process BP 5.778e-07
GO:0010413 glucuronoxylan metabolic process BP 7.070e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 3.706e-06
GO:0014070 response to organic cyclic compound BP 1.851e-05
GO:0009404 toxin metabolic process BP 4.867e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rrd1 IBA		 Log2 signal ratio
RGA-GR-DEX
1 244901_at ATMG00640 ORF25 1.011 0.056
2 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.869 0.058
3 244945_at ATMG00110 ABCI2, ATP-binding cassette I2, CCB206, cytochrome C biogenesis 206 0.750 0.106
4 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L 0.646 0.080
5 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.613 -0.016
6 257321_at ATMG01130 ORF106F 0.576 0.108
7 257333_at ATMG01360 COX1, cytochrome oxidase 0.378 0.042
8 266503_at AT2G47780 [Rubber elongation factor protein (REF)] 0.317 -0.082
9 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.308 -0.053
10 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 0.292 -0.022
11 260917_at AT1G02700 unknown 0.286 -0.091
12 244925_at ATMG00510 NAD7, NADH dehydrogenase subunit 7 0.246 0.027
13 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.236 0.024
14 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.234 -0.166
15 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.223 0.296
16 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 0.220 -0.036
17 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.207 -0.066
18 257151_at AT3G27200 [Cupredoxin superfamily protein] 0.189 -0.166
19 259520_at AT1G12320 unknown 0.186 0.032
20 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 0.185 -0.037
21 264181_at AT1G65350 UBQ13, ubiquitin 13 0.175 0.018
22 267295_at AT2G23800 GGPS2, geranylgeranyl pyrophosphate synthase 2, GGPS5, GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5 0.160 -0.171
23 257251_at AT3G24160 PMP, putative type 1 membrane protein -0.481 -0.017
24 265539_at AT2G15830 unknown -0.284 -0.048
25 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.253 -0.042
26 253796_at AT4G28460 unknown -0.210 0.104
27 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.209 0.163
28 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 -0.206 -0.012
29 247729_at AT5G59530 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.179 -0.032
30 265184_at AT1G23710 unknown -0.144 0.076
31 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.143 -0.064
32 245209_at AT5G12340 unknown -0.142 -0.053
33 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 -0.142 -0.040
34 247228_at AT5G65140 TPPJ, trehalose-6-phosphate phosphatase J -0.133 -0.082
35 263475_at AT2G31945 unknown -0.132 0.081
36 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.132 0.075
37 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.109 -0.042
38 257503_at AT1G72530 RIP7, RNA edi7ting-Interacting Protein -0.106 -0.030
39 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A -0.105 -0.009
40 259979_at AT1G76600 unknown -0.102 0.123
41 260589_at AT1G53400 [Ubiquitin domain-containing protein] -0.102 0.041
42 265879_at AT2G42450 [alpha/beta-Hydrolases superfamily protein] -0.099 0.074
43 255814_at AT1G19900 [glyoxal oxidase-related protein] -0.099 -0.040