4.0:Information of module
rid4 IBA
In comparison with Seedling KUA1-IOX est help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010413 glucuronoxylan metabolic process BP 2.058e-15
GO:0045492 xylan biosynthetic process BP 2.058e-15
GO:0045491 xylan metabolic process BP 6.055e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 2.645e-15
GO:1901700 response to oxygen-containing compound BP 7.865e-15
GO:0008219 cell death BP 5.570e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rid4 IBA		 Log2 signal ratio
Seedling KUA1-IOX est
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 1.057 -0.086
2 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.665 0.326
3 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 0.657 0.024
4 263402_at AT2G04050 [MATE efflux family protein] 0.542 0.189
5 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.535 0.082
6 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.512 -0.047
7 265463_at AT2G37090 IRX9, IRREGULAR XYLEM 9 0.442 -0.029
8 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 0.427 -0.190
9 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.412 0.025
10 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 0.379 0.017
11 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.368 -0.023
12 247893_at AT5G57980 RPB5C, RNA polymerase II fifth largest subunit, C 0.359 -0.021
13 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.343 -0.123
14 244932_at ATCG01060 PSAC 0.338 0.014
15 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.325 0.077
16 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.311 -0.029
17 263515_at AT2G21640 unknown 0.305 0.110
18 247880_at AT5G57780 P1R1, P1R1 0.298 -0.135
19 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 0.296 -0.104
20 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 0.295 -0.118
21 246825_at AT5G26260 [TRAF-like family protein] 0.290 -0.022
22 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 0.289 0.317
23 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 0.283 -0.021
24 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] 0.283 -0.085
25 259871_at AT1G76800 [Vacuolar iron transporter (VIT) family protein] 0.282 -0.055
26 250327_at AT5G12050 unknown 0.279 -0.104
27 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.278 0.209
28 248121_at AT5G54690 GAUT12, galacturonosyltransferase 12, IRX8, IRREGULAR XYLEM 8, LGT6 0.274 -0.008
29 254618_at AT4G18780 ATCESA8, CELLULOSE SYNTHASE 8, CESA8, CELLULOSE SYNTHASE 8, IRX1, IRREGULAR XYLEM 1, LEW2, LEAF WILTING 2 0.273 0.008
30 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 0.270 0.023
31 257151_at AT3G27200 [Cupredoxin superfamily protein] 0.265 -0.040
32 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.263 -0.021
33 246512_at AT5G15630 COBL4, COBRA-LIKE4, IRX6, IRREGULAR XYLEM 6 0.263 0.025
34 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.253 -0.074
35 257428_at AT1G78990 [HXXXD-type acyl-transferase family protein] 0.248 -0.052
36 265400_at AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.248 -0.015
37 251858_at AT3G54820 PIP2;5, plasma membrane intrinsic protein 2;5, PIP2D, PLASMA MEMBRANE INTRINSIC PROTEIN 2D 0.236 -0.106
38 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 0.235 -0.029
39 251373_at AT3G60530 GATA4, GATA transcription factor 4 0.232 0.021
40 250949_at AT5G03510 [C2H2-type zinc finger family protein] 0.231 -0.001
41 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.230 -0.081
42 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] 0.229 -0.052
43 255702_at AT4G00230 XSP1, xylem serine peptidase 1 0.227 0.027
44 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 0.225 -0.075
45 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 0.225 -0.154
46 259348_at AT3G03770 [Leucine-rich repeat protein kinase family protein] 0.222 0.002
47 256025_at AT1G58370 ATXYN1, ARABIDOPSIS THALIANA XYLANASE 1, RXF12 0.220 -0.021
48 251575_at AT3G58120 ATBZIP61, BZIP61 0.219 -0.115
49 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] 0.215 -0.066
50 264573_at AT1G05310 [Pectin lyase-like superfamily protein] 0.215 -0.029
51 267037_at AT2G38320 TBL34, TRICHOME BIREFRINGENCE-LIKE 34 0.214 -0.051
52 263825_at AT2G40370 LAC5, laccase 5 0.214 0.014
53 260584_at AT2G43660 [Carbohydrate-binding X8 domain superfamily protein] 0.214 0.026
54 246072_at AT5G20240 PI, PISTILLATA 0.212 -0.008
55 265332_at AT2G18410 unknown 0.209 -0.006
56 257332_at ATMG01350 ORF145C 0.208 0.017
57 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 0.206 -0.148
58 259660_at AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 0.206 -0.143
59 253743_at AT4G28940 [Phosphorylase superfamily protein] 0.204 0.037
60 244974_at ATCG00700 PSBN, photosystem II reaction center protein N 0.202 0.018
61 264824_at AT1G03420 Sadhu4-2, sadhu non-coding retrotransposon 4-2 0.202 0.010
62 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 0.201 -0.010
63 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.197 -0.071
64 248626_at AT5G48940 [Leucine-rich repeat transmembrane protein kinase family protein] 0.197 0.007
65 251987_at AT3G53280 CYP71B5, cytochrome p450 71b5 0.197 -0.164
66 261311_at AT1G05770 [Mannose-binding lectin superfamily protein] 0.197 -0.026
67 244961_at ATCG01040 YCF5 0.193 -0.008
68 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.192 -0.136
69 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 0.192 -0.030
70 252211_at AT3G50220 IRX15, IRREGULAR XYLEM 15 0.191 0.037
71 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] 0.189 -0.032
72 265964_at AT2G37510 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.186 -0.018
73 258054_at AT3G16240 AQP1, ATTIP2;1, DELTA-TIP, delta tonoplast integral protein, DELTA-TIP1, TIP2;1 0.186 0.018
74 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] 0.183 -0.056
75 250120_at AT5G16490 RIC4, ROP-interactive CRIB motif-containing protein 4 0.183 -0.016
76 264549_at AT1G09440 [Protein kinase superfamily protein] 0.183 -0.044
77 256416_at AT3G11050 ATFER2, ferritin 2, FER2, ferritin 2 0.181 0.066
78 256237_at AT3G12610 DRT100, DNA-DAMAGE REPAIR/TOLERATION 100 0.181 -0.124
79 259375_at AT3G16370 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.181 -0.042
80 264868_at AT1G24095 [Putative thiol-disulphide oxidoreductase DCC] 0.179 0.062
81 261203_at AT1G12845 unknown 0.177 -0.018
82 257337_at ATMG00060 NAD5, NADH DEHYDROGENASE SUBUNIT 5, NAD5.3, NADH DEHYDROGENASE SUBUNIT 5.3, NAD5C, NADH dehydrogenase subunit 5C 0.177 0.039
83 267276_at AT2G30130 ASL5, LBD12, PCK1, PEACOCK 1 0.174 0.005
84 258075_at AT3G25900 ATHMT-1, HMT-1 0.174 0.006
85 255417_at AT4G03190 AFB1, AUXIN SIGNALING F BOX PROTEIN 1, ATGRH1, GRH1, GRR1-like protein 1 0.173 0.006
86 263373_at AT2G20515 unknown 0.171 -0.027
87 254170_at AT4G24430 [Rhamnogalacturonate lyase family protein] 0.169 -0.007
88 258938_at AT3G10080 [RmlC-like cupins superfamily protein] 0.167 -0.094
89 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 -0.732 0.191
90 255811_at AT4G10250 ATHSP22.0 -0.490 0.166
91 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.433 0.000
92 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.429 -0.059
93 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.423 0.085
94 267645_at AT2G32860 BGLU33, beta glucosidase 33 -0.415 -0.103
95 250624_at AT5G07330 unknown -0.406 0.004
96 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.394 0.089
97 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 -0.356 0.050
98 252447_at AT3G47040 [Glycosyl hydrolase family protein] -0.340 0.035
99 248971_at AT5G45000 [Disease resistance protein (TIR-NBS-LRR class) family] -0.324 0.124
100 250485_at AT5G09990 PROPEP5, elicitor peptide 5 precursor -0.307 -0.038
101 248407_at AT5G51500 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.299 0.009
102 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 -0.288 -0.105
103 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] -0.283 -0.066
104 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] -0.282 0.049
105 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.276 0.042
106 265615_at AT2G25450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.275 -0.010
107 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 -0.268 0.086
108 252137_at AT3G50980 XERO1, dehydrin xero 1 -0.266 -0.027
109 251952_at AT3G53650 [Histone superfamily protein] -0.263 0.077
110 265582_at AT2G20030 [RING/U-box superfamily protein] -0.257 0.011
111 265131_at AT1G23760 JP630, PG3, POLYGALACTURONASE 3 -0.251 -0.023
112 263475_at AT2G31945 unknown -0.250 0.105
113 266083_at AT2G37820 [Cysteine/Histidine-rich C1 domain family protein] -0.245 0.008
114 255252_at AT4G04990 unknown -0.241 0.028
115 247519_at AT5G61430 ANAC100, NAC domain containing protein 100, ATNAC5, NAC100, NAC domain containing protein 100 -0.237 0.009
116 253965_at AT4G26490 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.236 -0.042
117 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] -0.232 0.093
118 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 -0.230 0.071
119 257479_at AT1G16150 WAKL4, wall associated kinase-like 4 -0.228 0.120
120 253689_at AT4G29770 unknown -0.227 -0.006
121 247740_at AT5G58940 CRCK1, calmodulin-binding receptor-like cytoplasmic kinase 1 -0.226 0.068
122 260568_at AT2G43570 CHI, chitinase, putative -0.226 -0.020
123 259028_at AT3G09290 TAC1, telomerase activator1 -0.225 0.038
124 258362_at AT3G14280 unknown -0.225 -0.040
125 266910_at AT2G45920 [U-box domain-containing protein] -0.222 0.113
126 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase -0.219 0.137
127 250697_at AT5G06800 [myb-like HTH transcriptional regulator family protein] -0.214 -0.100
128 256548_at AT3G14770 AtSWEET2, SWEET2 -0.213 0.078
129 251766_at AT3G55910 unknown -0.206 0.046
130 254362_at AT4G22160 unknown -0.206 0.002
131 251743_at AT3G55890 [Yippee family putative zinc-binding protein] -0.203 0.078
132 262855_at AT1G20860 PHT1;8, phosphate transporter 1;8 -0.199 0.031
133 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 -0.199 0.170
134 258203_at AT3G13950 unknown -0.198 0.172
135 256296_at AT1G69480 [EXS (ERD1/XPR1/SYG1) family protein] -0.196 -0.037
136 247212_at AT5G65040 unknown -0.196 -0.013
137 249009_at AT5G44610 MAP18, microtubule-associated protein 18, PCAP2, PLASMA MEMBRANE ASSOCIATED CA2+-BINDING PROTEIN-2 -0.195 0.012
138 261863_at AT1G50630 unknown -0.195 0.061
139 249071_at AT5G44050 [MATE efflux family protein] -0.192 0.059
140 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 -0.191 0.064
141 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 -0.188 0.009
142 257466_at AT1G62840 unknown -0.188 0.118
143 254289_at AT4G22980 unknown -0.188 0.022
144 262603_at AT1G15380 GLYI4, glyoxylase I 4 -0.188 0.043
145 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 -0.186 0.274
146 258707_at AT3G09480 [Histone superfamily protein] -0.184 0.042
147 246197_at AT4G37010 CEN2, centrin 2 -0.183 0.244
148 253796_at AT4G28460 unknown -0.181 0.104
149 255871_at AT2G30260 U2B'', U2 small nuclear ribonucleoprotein B -0.180 0.007
150 247531_at AT5G61550 [U-box domain-containing protein kinase family protein] -0.179 -0.019
151 248464_at AT5G51160 [Ankyrin repeat family protein] -0.177 0.053
152 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.177 0.048
153 259213_at AT3G09010 [Protein kinase superfamily protein] -0.177 0.145
154 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 -0.176 0.136
155 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] -0.176 0.042
156 260472_at AT1G10990 unknown -0.175 0.033
157 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 -0.174 -0.003
158 251950_at AT3G53600 [C2H2-type zinc finger family protein] -0.174 0.058
159 266824_at AT2G22800 HAT9 -0.173 -0.087
160 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c -0.173 -0.007
161 267445_at AT2G33680 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.172 -0.040
162 253509_at AT4G31710 ATGLR2.4, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.4, AUG8, augmin subunit 8, GLR2.4, glutamate receptor 2.4 -0.171 -0.025
163 260237_at AT1G74430 ATMYB95, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYBCP66, ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, MYB95, myb domain protein 95 -0.171 -0.051
164 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.171 -0.013
165 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.171 0.277
166 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] -0.171 0.165
167 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 -0.170 0.033
168 263436_at AT2G28690 unknown -0.168 0.016
169 258880_at AT3G06420 ATG8H, autophagy 8h -0.168 0.078
170 247177_at AT5G65300 unknown -0.168 0.107
171 246943_at AT5G25440 [Protein kinase superfamily protein] -0.167 0.057
172 252872_at AT4G40010 SNRK2-7, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNRK2.7, SNF1-related protein kinase 2.7, SRK2F -0.166 -0.017
173 259026_at AT3G09240 BSK9, brassinosteroid-signaling kinase 9 -0.166 0.030
174 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.165 -0.057
175 259356_at AT3G05250 [RING/U-box superfamily protein] -0.164 0.042