4.0:Information of module
ALC Toc1 light-dark EtOH
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 3.990e-07
GO:0042254 ribosome biogenesis BP 1.064e-06
GO:0022613 ribonucleoprotein complex biogenesis BP 1.578e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006952 defense response BP 1.592e-07
GO:0010200 response to chitin BP 5.772e-07
GO:1901698 response to nitrogen compound BP 1.675e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ALC Toc1 light-dark EtOH		 Log2 signal ratio
Dark 3day ivd
1 248052_at AT5G55800 [Cysteine/Histidine-rich C1 domain family protein] 1.167 -0.071
2 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.854 -4.789
3 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 0.673 -7.362
4 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.651 -4.575
5 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.609 1.145
6 260688_at AT1G17665 unknown 0.602 5.982
7 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.543 -2.322
8 267459_at AT2G33850 unknown 0.542 -0.071
9 261046_at AT1G01390 [UDP-Glycosyltransferase superfamily protein] 0.536 -4.875
10 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 0.521 -6.348
11 256497_at AT1G31580 CXC750, ECS1 0.521 -5.803
12 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.492 -5.434
13 265611_at AT2G25510 unknown 0.462 -3.499
14 258675_at AT3G08770 LTP6, lipid transfer protein 6 0.461 -2.719
15 254226_at AT4G23690 AtDIR6, Arabidopsis thaliana dirigent protein 6, DIR6, dirigent protein 6 0.459 -5.242
16 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.438 4.222
17 251167_at AT3G63360 [defensin-related] 0.431 -0.071
18 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.427 3.314
19 266592_at AT2G46210 AtSLD2, SLD2, sphingoid LCB desaturase 2 0.422 -2.546
20 248382_at AT5G51890 [Peroxidase superfamily protein] 0.421 -7.635
21 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.411 -0.071
22 248330_at AT5G52810 [NAD(P)-binding Rossmann-fold superfamily protein] 0.410 -1.285
23 266790_at AT2G28950 ATEXP6, ARABIDOPSIS THALIANA TEXPANSIN 6, ATEXPA6, expansin A6, ATHEXP ALPHA 1.8, EXPA6, expansin A6 0.407 -7.414
24 249366_at AT5G40610 GPDHp, Glycerol-3-phosphate dehydrogenase plastidic 0.407 -1.509
25 261004_at AT1G26450 [Carbohydrate-binding X8 domain superfamily protein] 0.404 1.812
26 250433_at AT5G10400 H3.1, histone 3.1 0.400 -3.429
27 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 0.400 -0.071
28 258695_at AT3G09640 APX1B, ASCORBATE PEROXIDASE 1B, APX2, ascorbate peroxidase 2 0.391 0.457
29 253753_at AT4G29030 [Putative membrane lipoprotein] 0.387 -0.071
30 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.379 -0.071
31 260982_at AT1G53520 AtFAP3, FAP3, fatty-acid-binding protein 3 0.372 -7.403
32 250661_at AT5G07030 [Eukaryotic aspartyl protease family protein] 0.371 -4.430
33 253024_at AT4G38080 [hydroxyproline-rich glycoprotein family protein] 0.371 0.966
34 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] 0.368 -0.071
35 245880_at AT5G09430 [alpha/beta-Hydrolases superfamily protein] 0.362 2.496
36 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 0.362 -1.081
37 253720_at AT4G29270 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.352 -1.532
38 259766_at AT1G64360 unknown 0.349 -3.258
39 248693_at AT5G48330 RUG2, RCC1/UVR8/GEF-like 2 0.348 0.853
40 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.348 3.891
41 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.345 -4.229
42 260937_at AT1G45160 [Protein kinase superfamily protein] 0.342 0.771
43 257151_at AT3G27200 [Cupredoxin superfamily protein] 0.338 -5.647
44 251886_at AT3G54260 TBL36, TRICHOME BIREFRINGENCE-LIKE 36 0.334 -5.293
45 247765_at AT5G58860 CYP86, CYP86A1, cytochrome P450, family 86, subfamily A, polypeptide 1, HORST, hydroxylase of root suberized tissue 0.333 0.842
46 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 0.331 -3.386
47 253998_at AT4G26010 [Peroxidase superfamily protein] 0.331 1.146
48 254718_at AT4G13580 [Disease resistance-responsive (dirigent-like protein) family protein] 0.329 1.791
49 254756_at AT4G13235 EDA21, embryo sac development arrest 21 0.328 -0.603
50 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] 0.327 -3.049
51 256125_at AT1G18250 ATLP-1 0.327 -5.311
52 251846_at AT3G54560 HTA11, histone H2A 11 0.321 -2.007
53 251238_at AT3G62430 [Protein with RNI-like/FBD-like domains] 0.320 1.150
54 246228_at AT4G36430 [Peroxidase superfamily protein] 0.320 -3.945
55 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.319 -4.794
56 258548_at AT3G06910 AtULP1a, ELS1, ESD4-LIKE SUMO PROTEASE 1, ULP1A, UB-like protease 1A 0.316 -0.591
57 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.316 -2.401
58 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 0.311 -5.659
59 249046_at AT5G44400 [FAD-binding Berberine family protein] 0.310 -4.153
60 266735_at AT2G46930 [Pectinacetylesterase family protein] 0.306 -4.198
61 255236_at AT4G05520 ATEHD2, EPS15 homology domain 2, EHD2, EPS15 homology domain 2 0.303 3.348
62 250365_at AT5G11410 [Protein kinase superfamily protein] 0.298 -3.113
63 249227_at AT5G42180 PER64, peroxidase 64 0.296 -0.071
64 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] 0.295 -0.071
65 262040_at AT1G80080 AtRLP17, Receptor Like Protein 17, TMM, TOO MANY MOUTHS 0.292 -1.591
66 252916_at AT4G38950 [ATP binding microtubule motor family protein] 0.291 -6.409
67 250764_at AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.289 -3.369
68 263284_at AT2G36100 CASP1, Casparian strip membrane domain protein 1 0.288 -0.071
69 249916_at AT5G22880 H2B, HISTONE H2B, HTB2, histone B2 0.288 -2.645
70 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 0.286 -4.895
71 263628_at AT2G04780 FLA7, FASCICLIN-like arabinoogalactan 7 0.283 -6.314
72 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.283 -0.071
73 254205_at AT4G24170 [ATP binding microtubule motor family protein] 0.282 -2.913
74 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 0.278 1.145
75 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 0.278 -3.666
76 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 0.276 -4.787
77 260012_at AT1G67865 unknown 0.276 -0.066
78 245253_at AT4G15440 CYP74B2, HPL1, hydroperoxide lyase 1 0.274 -4.501
79 263680_at AT1G26930 [Galactose oxidase/kelch repeat superfamily protein] 0.271 -0.122
80 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 0.270 -5.372
81 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.270 3.231
82 255860_at AT5G34940 AtGUS3, glucuronidase 3, GUS3, glucuronidase 3 0.270 -0.632
83 250059_at AT5G17820 [Peroxidase superfamily protein] 0.270 -0.071
84 247210_at AT5G65020 ANNAT2, annexin 2, AtANN2 0.268 -2.771
85 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] 0.267 -1.588
86 245088_at AT2G39850 [Subtilisin-like serine endopeptidase family protein] 0.266 -4.162
87 253008_at AT4G38210 ATEXP20, ATEXPA20, expansin A20, ATHEXP ALPHA 1.23, EXP20, EXPANSIN 20, EXPA20, expansin A20 0.265 -0.384
88 250434_at AT5G10390 H3.1, histone 3.1 0.265 -4.975
89 259966_at AT1G76500 AHL29, AT-hook motif nuclear-localized protein 29, SOB3, SUPPRESSOR OF PHYB-4#3 0.264 -0.603
90 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D 0.264 -0.488
91 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.264 -0.071
92 248810_at AT5G47280 ADR1-L3, ADR1-like 3 -1.071 -0.071
93 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.743 -3.575
94 248736_at AT5G48110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.652 5.475
95 250135_at AT5G15360 unknown -0.627 -0.071
96 249454_at AT5G39520 unknown -0.567 8.685
97 253689_at AT4G29770 unknown -0.563 -0.071
98 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 -0.540 3.015
99 257417_at AT1G10110 [F-box family protein] -0.519 1.817
100 249955_at AT5G18840 [Major facilitator superfamily protein] -0.511 6.350
101 260396_at AT1G69720 HO3, heme oxygenase 3 -0.510 -0.139
102 265817_at AT2G18050 HIS1-3, histone H1-3 -0.480 5.473
103 255414_at AT4G03156 [small GTPase-related] -0.478 -0.071
104 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.450 1.209
105 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.431 -0.071
106 262421_at AT1G50290 unknown -0.431 -0.143
107 254566_at AT4G19240 unknown -0.422 -0.071
108 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.421 0.623
109 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.419 5.166
110 259441_at AT1G02300 [Cysteine proteinases superfamily protein] -0.418 1.739
111 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] -0.409 -0.538
112 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.404 -0.109
113 260973_at AT1G53490 HEI10, homolog of human HEI10 ( Enhancer of cell Invasion No.10) -0.401 3.168
114 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.390 -0.071
115 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.389 -0.071
116 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.383 1.804
117 262452_at AT1G11210 unknown -0.374 6.482
118 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 -0.371 6.112
119 259962_at AT1G53690 [DNA directed RNA polymerase, 7 kDa subunit] -0.371 -3.212
120 257947_at AT3G21720 ICL, isocitrate lyase -0.365 4.655
121 246888_at AT5G26270 unknown -0.354 -0.082
122 252136_at AT3G50770 CML41, calmodulin-like 41 -0.349 2.974
123 249645_at AT5G36910 THI2.2, thionin 2.2 -0.349 -3.694
124 253796_at AT4G28460 unknown -0.343 5.757
125 257817_at AT3G25150 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.343 -0.810
126 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.331 -0.424
127 255538_at AT4G01680 AtMYB55, myb domain protein 55, MYB55, myb domain protein 55 -0.324 -1.042
128 254231_at AT4G23810 ATWRKY53, WRKY53 -0.318 -0.786
129 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.315 4.181
130 254683_at AT4G13800 unknown -0.315 -3.710
131 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] -0.313 0.136
132 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 -0.312 4.256
133 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] -0.305 0.727
134 259850_at AT1G72240 unknown -0.303 -2.229
135 257925_at AT3G23170 unknown -0.295 2.659
136 260415_at AT1G69790 [Protein kinase superfamily protein] -0.295 4.206
137 247250_at AT5G64630 FAS2, FASCIATA 2, MUB3.9, NFB01, NFB1 -0.295 -3.578
138 257580_at AT3G06210 [ARM repeat superfamily protein] -0.292 0.946
139 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.282 3.890
140 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 -0.280 -1.806
141 261374_at AT1G52990 [thioredoxin family protein] -0.276 -2.248
142 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A -0.275 5.670
143 265539_at AT2G15830 unknown -0.267 2.125
144 253322_at AT4G33980 unknown -0.263 10.712
145 261673_at AT1G18280 LTPG3, glycosylphosphatidylinositol-anchored lipid protein transfer 3 -0.260 6.657
146 249903_at AT5G22690 [Disease resistance protein (TIR-NBS-LRR class) family] -0.258 1.015
147 258351_at AT3G17700 ATCNGC20, CYCLIC NUCLEOTIDE-GATED CHANNEL 20, CNBT1, cyclic nucleotide-binding transporter 1, CNGC20, cyclic nucleotide gated channel 20 -0.257 1.159
148 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.254 4.940
149 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.252 8.518
150 266917_at AT2G45830 DTA2, downstream target of AGL15 2 -0.252 0.561
151 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.245 3.161
152 250772_at AT5G05420 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.239 2.468
153 265249_at AT2G01940 ATIDD15, ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SGR5, SHOOT GRAVITROPISM 5 -0.237 3.113
154 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.237 -3.593
155 259472_at AT1G18910 [zinc ion binding] -0.237 1.127
156 259250_at AT3G07580 unknown -0.235 -1.247
157 252551_at AT3G45880 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.234 -0.125
158 254914_at AT4G11290 [Peroxidase superfamily protein] -0.234 -2.498
159 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.233 0.193
160 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] -0.233 5.596
161 253182_at AT4G35190 LOG5, LONELY GUY 5 -0.233 0.457
162 253066_at AT4G37770 ACS8, 1-amino-cyclopropane-1-carboxylate synthase 8 -0.232 3.139
163 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 -0.232 6.732
164 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.231 1.467
165 256976_at AT3G21020 [copia-like retrotransposon family, has a 5.4e-14 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.231 1.179
166 249234_at AT5G42200 [RING/U-box superfamily protein] -0.229 1.465
167 254596_at AT4G18975 [Pentatricopeptide repeat (PPR) superfamily protein] -0.229 -0.719
168 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.227 -5.600
169 263438_at AT2G28660 [Chloroplast-targeted copper chaperone protein] -0.225 0.574
170 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 -0.220 10.571
171 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.220 -2.960
172 259683_at AT1G63050 AtLPLAT2, LPCAT2, lysophosphatidylcholine acyltransferase 2, LPLAT2, lysophospholipid acyltransferase 2 -0.219 -2.242
173 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.219 -0.071
174 255794_at AT2G33480 ANAC041, NAC domain containing protein 41, NAC041, NAC domain containing protein 41 -0.219 0.990
175 253054_at AT4G37580 COP3, CONSTITUTIVE PHOTOMORPHOGENIC 3, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2 -0.218 -0.415
176 263208_at AT1G10480 ZFP5, zinc finger protein 5 -0.218 -0.071
177 257333_at ATMG01360 COX1, cytochrome oxidase -0.217 3.577
178 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT -0.216 1.040
179 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b -0.216 2.137
180 256499_at AT1G36640 unknown -0.215 2.353
181 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 -0.215 0.842