4.0:Information of module
pif5 high R/FR
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046488 phosphatidylinositol metabolic process BP 4.558e-04
GO:0042254 ribosome biogenesis BP 4.612e-04
GO:0022613 ribonucleoprotein complex biogenesis BP 5.403e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 1.045e-08
GO:0009725 response to hormone BP 2.506e-08
GO:0009719 response to endogenous stimulus BP 2.753e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif5 high R/FR		 Log2 signal ratio
Leafminer damaged seedlings
1 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C 0.154 -0.012
2 256620_at AT3G24480 [Leucine-rich repeat (LRR) family protein] 0.144 -0.100
3 246703_at AT5G28080 WNK9 0.140 0.032
4 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.122 0.108
5 256966_at AT3G13400 sks13, SKU5 similar 13 0.118 0.039
6 255730_at AT1G25460 [NAD(P)-binding Rossmann-fold superfamily protein] 0.111 0.013
7 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.111 -0.247
8 245429_at AT4G17580 [Bax inhibitor-1 family protein] 0.110 0.071
9 256096_at AT1G13650 unknown 0.110 -0.608
10 263593_at AT2G01860 EMB975, EMBRYO DEFECTIVE 975 0.110 -0.181
11 251863_at AT3G54870 ARK1, ARMADILLO REPEAT-CONTAINING KINESIN 1, AtKINUc, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, CAE1, CA-ROP2 ENHANCER 1, MRH2, MORPHOGENESIS OF ROOT HAIR 2 0.105 -0.027
12 252709_at AT3G43840 [3-oxo-5-alpha-steroid 4-dehydrogenase family protein] 0.103 0.048
13 258504_at AT3G02590 [Fatty acid hydroxylase superfamily protein] 0.100 -0.056
14 249744_at AT5G24550 BGLU32, beta glucosidase 32 0.099 -0.025
15 262893_at AT1G59790 [Cullin family protein] 0.097 -0.036
16 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.094 1.437
17 262279_at AT1G68630 [PLAC8 family protein] 0.093 0.018
18 247088_at AT5G66340 unknown 0.090 -0.026
19 257424_at AT1G78840 [F-box/RNI-like/FBD-like domains-containing protein] 0.089 0.000
20 251381_at AT3G60720 PDLP8, plasmodesmata-located protein 8 0.089 -0.045
21 264129_at AT1G79170 unknown 0.089 -0.091
22 256742_at AT3G29380 pBRP2, plant-specific TFIIB-related protein 2 0.088 -0.022
23 248897_at AT5G46360 ATKCO3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, KCO3, Ca2+ activated outward rectifying K+ channel 3 0.088 0.081
24 256951_at AT3G19085 unknown 0.087 -0.108
25 265973_at AT2G11240 [non-LTR retrotransposon family (LINE), has a 1.1e-38 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.087 -0.039
26 246526_at AT5G15720 GLIP7, GDSL-motif lipase 7 0.087 0.048
27 261923_at AT1G22380 AtUGT85A3, UDP-glucosyl transferase 85A3, UGT85A3, UDP-glucosyl transferase 85A3 0.087 0.055
28 264541_at AT1G55660 [FBD, F-box and Leucine Rich Repeat domains containing protein] 0.086 0.052
29 253713_at AT4G29370 [Galactose oxidase/kelch repeat superfamily protein] 0.086 -0.013
30 264973_at AT1G27040 AtNPF4.5, NPF4.5, NRT1/ PTR family 4.5 0.084 0.009
31 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.240 -0.154
32 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.283 0.189
33 253794_at AT4G28720 YUC8, YUCCA 8 -0.214 -0.034
34 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.188 -0.292
35 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.188 0.128
36 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.184 -0.214
37 252765_at AT3G42800 unknown -0.181 -0.176
38 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.180 -0.009
39 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.178 -0.416
40 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.168 -0.107
41 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.158 -0.278
42 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.154 -0.016
43 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.151 -0.287
44 250657_at AT5G07000 ATST2B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, ST2B, sulfotransferase 2B -0.148 -0.129
45 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE -0.148 -0.149
46 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.147 1.222
47 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.144 0.184
48 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 -0.134 0.015
49 252296_at AT3G48970 [Heavy metal transport/detoxification superfamily protein ] -0.133 -0.112
50 259332_at AT3G03830 SAUR28, SMALL AUXIN UP RNA 28 -0.133 -0.174
51 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.131 0.122
52 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 -0.131 -0.044
53 248160_at AT5G54470 BBX29, B-box domain protein 29 -0.130 0.416
54 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.128 -0.330
55 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.127 -0.381
56 266830_at AT2G22810 ACC4, 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, ACS4, 1-aminocyclopropane-1-carboxylate synthase 4, ATACS4 -0.121 -0.156
57 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.120 -0.190
58 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.118 -0.351
59 246888_at AT5G26270 unknown -0.118 0.273