4.0:Information of module
pif4pif5 low R/FR
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 9.576e-11
GO:0015995 chlorophyll biosynthetic process BP 1.796e-10
GO:0006779 porphyrin-containing compound biosynthet... BP 1.933e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016126 sterol biosynthetic process BP 7.612e-08
GO:0016125 sterol metabolic process BP 2.768e-07
GO:0006694 steroid biosynthetic process BP 8.372e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pif4pif5 low R/FR		 Log2 signal ratio
Leafminer damaged seedlings
1 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.289 0.932
2 257511_at AT1G43000 [PLATZ transcription factor family protein] 0.287 0.068
3 251196_at AT3G62950 [Thioredoxin superfamily protein] 0.277 0.535
4 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] 0.260 -0.236
5 260831_at AT1G06830 [Glutaredoxin family protein] 0.256 -0.212
6 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 0.247 0.030
7 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 0.245 -0.014
8 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 0.240 -0.065
9 256096_at AT1G13650 unknown 0.226 -0.608
10 248789_at AT5G47440 unknown 0.223 -0.116
11 245076_at AT2G23170 GH3.3 0.209 0.781
12 257232_at AT3G16500 IAA26, indole-3-acetic acid inducible 26, PAP1, phytochrome-associated protein 1 0.205 0.241
13 265414_at AT2G16660 [Major facilitator superfamily protein] 0.204 0.189
14 257689_at AT3G12820 AtMYB10, myb domain protein 10, MYB10, myb domain protein 10 0.198 -0.010
15 249996_at AT5G18600 [Thioredoxin superfamily protein] 0.197 0.268
16 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 0.192 -0.131
17 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] 0.182 -0.264
18 251507_at AT3G59080 [Eukaryotic aspartyl protease family protein] 0.180 0.407
19 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.179 0.353
20 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A 0.178 0.150
21 264741_at AT1G62290 [Saposin-like aspartyl protease family protein] 0.177 -0.209
22 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 0.176 0.224
23 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.174 -0.031
24 256789_at AT3G13672 SINA2 0.172 0.452
25 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C 0.171 -0.012
26 259579_at AT1G28010 ABCB14, ATP-binding cassette B14, ATABCB14, Arabidopsis thaliana ATP-binding cassette B14, MDR12, multi-drug resistance 12, PGP14, P-glycoprotein 14 0.163 0.364
27 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.158 0.273
28 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 0.153 0.035
29 262703_at AT1G16510 SAUR41, SMALL AUXIN UPREGULATED 41 0.152 0.263
30 262902_x_at AT1G59930 [MADS-box family protein] 0.149 -0.132
31 247943_at AT5G57170 [Tautomerase/MIF superfamily protein] 0.148 -0.137
32 259743_at AT1G71140 [MATE efflux family protein] 0.147 0.149
33 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.145 0.889
34 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H 0.144 0.158
35 258323_at AT3G22750 [Protein kinase superfamily protein] 0.142 -0.054
36 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.139 0.690
37 247255_at AT5G64780 [Uncharacterised conserved protein UCP009193] 0.138 -0.032
38 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.135 -0.062
39 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.133 -0.063
40 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.131 0.807
41 260012_at AT1G67865 unknown 0.129 0.169
42 266873_at AT2G44740 CYCP4;1, cyclin p4;1 0.127 -0.212
43 247366_at AT5G63260 [Zinc finger C-x8-C-x5-C-x3-H type family protein] 0.126 0.049
44 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.124 0.951
45 245690_at AT5G04230 ATPAL3, PAL3, phenyl alanine ammonia-lyase 3 0.124 -0.407
46 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 0.123 -0.026
47 257398_at AT2G01990 unknown 0.120 -0.236
48 263090_at AT2G16190 unknown 0.119 -0.024
49 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.118 0.285
50 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 0.118 -0.001
51 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 0.118 0.335
52 251879_at AT3G54200 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.117 0.245
53 245885_at AT5G09440 EXL4, EXORDIUM like 4 0.117 0.481
54 253215_at AT4G34950 [Major facilitator superfamily protein] 0.117 0.029
55 253048_at AT4G37560 [Acetamidase/Formamidase family protein] 0.116 -0.288
56 263566_at AT2G15340 [glycine-rich protein] 0.116 0.028
57 259578_at AT1G27990 unknown 0.116 -0.040
58 260553_at AT2G41800 unknown 0.116 0.543
59 255959_at AT1G21980 ATPIP5K1, phosphatidylinositol-4-phosphate 5-kinase 1, ATPIPK1, PIP5K1, phosphatidylinositol-4-phosphate 5-kinase 1 0.115 -0.002
60 259860_at AT1G80640 [Protein kinase superfamily protein] 0.114 -0.393
61 266496_at AT2G07070 transposable element gene 0.113 0.020
62 247562_at AT5G61120 unknown 0.113 0.006
63 254758_at AT4G13260 AtYUC2, YUC2, YUCCA2 0.111 -0.097
64 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.111 0.072
65 247946_at AT5G57180 CIA2, chloroplast import apparatus 2 0.111 -0.339
66 253054_at AT4G37580 COP3, CONSTITUTIVE PHOTOMORPHOGENIC 3, HLS1, HOOKLESS 1, UNS2, UNUSUAL SUGAR RESPONSE 2 0.110 -0.403
67 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] 0.109 -0.187
68 262977_at AT1G75490 [Integrase-type DNA-binding superfamily protein] 0.109 0.034
69 259527_at AT1G12600 [UDP-N-acetylglucosamine (UAA) transporter family] 0.109 -0.023
70 248394_at AT5G52070 [Agenet domain-containing protein] 0.109 0.012
71 266088_at AT2G37780 [Cysteine/Histidine-rich C1 domain family protein] 0.107 0.032
72 266691_at AT2G19890 unknown 0.107 -0.009
73 262001_at AT1G33790 [jacalin lectin family protein] 0.106 0.053
74 263549_at AT2G21650 ATRL2, ARABIDOPSIS RAD-LIKE 2, MEE3, MATERNAL EFFECT EMBRYO ARREST 3, RSM1, RADIALIS-LIKE SANT/MYB 1 0.106 -0.307
75 258796_at AT3G04630 WDL1, WVD2-like 1 0.105 0.265
76 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.105 -0.408
77 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.104 -0.070
78 253794_at AT4G28720 YUC8, YUCCA 8 0.102 -0.034
79 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.102 -0.243
80 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -1.181 -0.154
81 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.685 -0.138
82 251012_at AT5G02580 unknown -0.451 0.353
83 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 -0.430 0.140
84 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like -0.374 0.078
85 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.363 -0.381
86 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.362 -0.292
87 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.343 -0.284
88 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] -0.336 -0.330
89 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.303 0.041
90 251245_at AT3G62090 PIF6, PHYTOCHROME-INTERACTING FACTOR 6, PIL2, phytochrome interacting factor 3-like 2 -0.301 0.084
91 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.293 0.322
92 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.283 1.222
93 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.276 0.184
94 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.267 0.159
95 252765_at AT3G42800 unknown -0.266 -0.176
96 258196_at AT3G13980 unknown -0.265 -0.156
97 265276_at AT2G28400 unknown -0.264 0.875
98 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.261 -0.496
99 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.260 1.073
100 266814_at AT2G44910 ATHB-4, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, ATHB4, homeobox-leucine zipper protein 4, HB4, homeobox-leucine zipper protein 4 -0.258 0.020
101 262452_at AT1G11210 unknown -0.254 0.762
102 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.245 -1.219
103 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a -0.244 0.545
104 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.234 -0.188
105 250982_at AT5G03150 JKD, JACKDAW -0.234 -0.085
106 258672_at AT3G08570 [Phototropic-responsive NPH3 family protein] -0.233 -0.014
107 249588_at AT5G37790 [Protein kinase superfamily protein] -0.232 -0.398
108 263133_at AT1G78450 [SOUL heme-binding family protein] -0.226 -0.432
109 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.224 -0.143
110 250823_at AT5G05180 unknown -0.223 -0.140
111 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.222 -0.678
112 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 -0.220 0.727
113 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] -0.220 -0.040
114 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 -0.220 0.398
115 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.218 0.176
116 261109_at AT1G75450 ATCKX5, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, ATCKX6, CYTOKININ OXIDASE 6, CKX5, cytokinin oxidase 5 -0.212 0.805
117 261957_at AT1G64660 ATMGL, methionine gamma-lyase, MGL, methionine gamma-lyase -0.210 0.336
118 255642_at AT4G00820 iqd17, IQ-domain 17 -0.209 -0.267
119 259846_at AT1G72140 [Major facilitator superfamily protein] -0.208 0.193
120 256617_at AT3G22240 unknown -0.206 -0.079
121 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.205 -0.176
122 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.205 -0.107
123 266320_at AT2G46640 TAC1, Tiller Angle Control 1 -0.203 0.141
124 253254_at AT4G34650 SQS2, squalene synthase 2 -0.192 -0.147
125 260297_at AT1G80280 [alpha/beta-Hydrolases superfamily protein] -0.188 -0.198
126 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.185 -0.093
127 249047_at AT5G44410 [FAD-binding Berberine family protein] -0.185 -0.611
128 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.184 -0.293
129 257254_at AT3G21950 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.181 -0.348
130 265688_at AT2G24300 [Calmodulin-binding protein] -0.179 -0.066
131 247324_at AT5G64190 unknown -0.179 -0.016
132 258003_at AT3G29030 ATEXP5, ARABIDOPSIS THALIANA EXPANSIN 5, ATEXPA5, ARABIDOPSIS THALIANA EXPANSIN A5, ATHEXP ALPHA 1.4, EXP5, EXPANSIN 5, EXPA5, expansin A5 -0.177 -0.240
133 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] -0.177 0.009
134 252983_at AT4G37980 ATCAD7, CAD7, CINNAMYL-ALCOHOL DEHYDROGENASE 7, ELI3, ELICITOR-ACTIVATED GENE 3, ELI3-1, elicitor-activated gene 3-1 -0.176 0.052
135 247189_at AT5G65390 AGP7, arabinogalactan protein 7 -0.175 -0.352
136 265611_at AT2G25510 unknown -0.174 -0.009
137 257875_at AT3G17120 unknown -0.169 -0.001
138 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.167 0.123
139 261580_at AT1G01110 IQD18, IQ-domain 18 -0.167 0.065
140 257650_at AT3G16800 [Protein phosphatase 2C family protein] -0.166 0.279
141 247570_at AT5G61250 AtGUS1, glucuronidase 1, GUS1, glucuronidase 1 -0.166 -0.012
142 259531_at AT1G12460 [Leucine-rich repeat protein kinase family protein] -0.165 -0.472
143 256150_at AT1G55120 AtcwINV3, 6-fructan exohydrolase, ATFRUCT5, beta-fructofuranosidase 5, FRUCT5, beta-fructofuranosidase 5 -0.164 0.025
144 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.164 0.177
145 252149_at AT3G51290 APSR1, Altered Phosphate Starvation Response 1 -0.163 -0.081
146 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.161 -0.268
147 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 -0.157 -0.263
148 262312_at AT1G70830 MLP28, MLP-like protein 28 -0.155 0.072
149 246888_at AT5G26270 unknown -0.155 0.273
150 249755_at AT5G24580 [Heavy metal transport/detoxification superfamily protein ] -0.155 -0.697
151 248291_at AT5G53020 [Ribonuclease P protein subunit P38-related] -0.154 -0.414
152 251646_at AT3G57780 unknown -0.152 -0.323
153 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.152 0.685
154 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.151 -0.070
155 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.151 -0.143
156 250942_at AT5G03350 [Legume lectin family protein] -0.149 -0.003
157 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] -0.146 -0.464