4.0:Information of module
24h volatiles Sm. R3089
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009741 response to brassinosteroid BP 5.364e-07
GO:0010155 regulation of proton transport BP 1.066e-06
GO:0032879 regulation of localization BP 1.400e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009813 flavonoid biosynthetic process BP 1.140e-07
GO:0009812 flavonoid metabolic process BP 4.327e-07
GO:1901700 response to oxygen-containing compound BP 8.336e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
24h volatiles Sm. R3089		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.614 0.466
2 261658_at AT1G50040 unknown 0.511 -0.077
3 260495_at AT2G41810 unknown 0.436 -0.278
4 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.401 0.605
5 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 0.388 0.144
6 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.387 0.444
7 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.374 -0.270
8 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.335 0.684
9 263953_at AT2G36050 ATOFP15, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15, OFP15, ovate family protein 15 0.325 -0.405
10 249008_at AT5G44680 [DNA glycosylase superfamily protein] 0.274 0.387
11 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 0.270 0.027
12 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] 0.268 -1.309
13 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 0.264 0.092
14 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.262 -0.030
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.261 -0.203
16 264361_at AT1G03300 unknown 0.260 -0.537
17 264521_at AT1G10020 unknown 0.255 0.144
18 246926_at AT5G25240 unknown 0.235 -0.547
19 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.227 -0.546
20 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 0.226 -0.750
21 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 0.217 1.281
22 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] 0.215 -0.215
23 245176_at AT2G47440 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.200 0.761
24 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.196 -0.313
25 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 0.189 0.340
26 247406_at AT5G62920 ARR6, response regulator 6 0.188 -0.966
27 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 0.187 -0.367
28 264910_at AT1G61100 [disease resistance protein (TIR class), putative] 0.183 1.021
29 245906_at AT5G11070 unknown 0.172 -0.257
30 248385_at AT5G51910 [TCP family transcription factor ] 0.170 -0.228
31 264482_at AT1G77210 AtSTP14, sugar transport protein 14, STP14, sugar transport protein 14 0.167 -0.432
32 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 0.166 -0.948
33 253583_at AT4G30680 [Initiation factor eIF-4 gamma, MA3] 0.160 0.249
34 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 0.150 -0.944
35 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.148 0.121
36 250777_at AT5G05440 PYL5, PYRABACTIN RESISTANCE 1-LIKE 5, RCAR8, regulatory component of ABA receptor 8 0.148 0.996
37 259996_at AT1G67910 unknown 0.143 0.185
38 253782_at AT4G28590 AtECB1, ECB1, early chloroplast biogenesis 1, MRL7, Mesophyll-cell RNAi Library line 7, SVR4, SUPPRESSOR OF VARIEGATION 4 0.142 -0.178
39 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 0.139 -0.554
40 258939_at AT3G10020 unknown 0.132 0.237
41 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.131 0.462
42 265938_at AT2G19620 NDL3, N-MYC downregulated-like 3 0.126 0.534
43 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] 0.126 1.278
44 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 0.125 1.057
45 247946_at AT5G57180 CIA2, chloroplast import apparatus 2 0.124 0.384
46 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.355 -0.701
47 257262_at AT3G21890 BBX31, B-box domain protein 31 -0.301 -0.318
48 266757_at AT2G46940 unknown -0.271 0.231
49 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.246 0.073
50 260727_at AT1G48100 [Pectin lyase-like superfamily protein] -0.243 -0.864
51 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.236 -1.190
52 265892_at AT2G15020 unknown -0.230 0.099
53 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 -0.228 0.531
54 251970_at AT3G53150 UGT73D1, UDP-glucosyl transferase 73D1 -0.217 -0.711
55 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 -0.212 -1.251
56 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.206 0.033
57 266820_at AT2G44940 [Integrase-type DNA-binding superfamily protein] -0.197 0.135
58 250408_at AT5G10930 CIPK5, CBL-interacting protein kinase 5, SnRK3.24, SNF1-RELATED PROTEIN KINASE 3.24 -0.190 -0.640
59 246236_at AT4G36470 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.185 -1.258
60 251944_at AT3G53510 ABCG20, ATP-binding cassette G20 -0.174 -0.650
61 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.173 -0.256
62 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 -0.172 0.203
63 248959_at AT5G45630 unknown -0.160 -0.155
64 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] -0.157 -0.269
65 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.155 -0.139
66 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] -0.155 0.663
67 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.151 -0.317
68 261758_at AT1G08250 ADT6, arogenate dehydratase 6, AtADT6, Arabidopsis thaliana arogenate dehydratase 6 -0.146 0.358
69 266346_at AT2G01430 ATHB-17, ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, ATHB17, homeobox-leucine zipper protein 17, HB17, homeobox-leucine zipper protein 17 -0.142 -0.178
70 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.138 -0.753
71 247055_at AT5G66740 unknown -0.136 -0.602
72 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] -0.134 0.252
73 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 -0.134 0.154
74 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 -0.132 0.098
75 259705_at AT1G77450 anac032, NAC domain containing protein 32, NAC032, NAC domain containing protein 32 -0.132 -0.067
76 264828_at AT1G03380 ATATG18G, homolog of yeast autophagy 18 (ATG18) G, ATG18G, homolog of yeast autophagy 18 (ATG18) G -0.130 -0.559
77 254185_at AT4G23990 ATCSLG3, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE G3, CSLG3, cellulose synthase like G3 -0.129 -0.265
78 246125_at AT5G19875 unknown -0.129 -0.673
79 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.127 -0.678
80 255198_at AT4G07460 unknown -0.126 -0.260
81 265957_at AT2G37300 ABCI16, ATP-binding cassette I16 -0.125 0.611
82 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.124 -0.275
83 256366_at AT1G66880 [Protein kinase superfamily protein] -0.124 -0.661
84 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 -0.123 -0.847
85 257120_at AT3G20200 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.123 -0.171
86 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 -0.122 -0.383
87 250670_at AT5G06860 ATPGIP1, POLYGALACTURONASE INHIBITING PROTEIN 1, PGIP1, polygalacturonase inhibiting protein 1 -0.122 -0.046
88 262118_at AT1G02850 BGLU11, beta glucosidase 11 -0.122 0.042
89 256093_at AT1G20823 [RING/U-box superfamily protein] -0.122 -0.318