4.0:Information of module
msh1 variegation Col-0
In comparison with Methyl Jasmonate 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 1.965e-16
GO:0044281 small molecule metabolic process BP 2.367e-16
GO:0006082 organic acid metabolic process BP 2.313e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 4.090e-21
GO:0044272 sulfur compound biosynthetic process BP 3.055e-18
GO:1901605 alpha-amino acid metabolic process BP 1.935e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
msh1 variegation Col-0		 Log2 signal ratio
Methyl Jasmonate 3 h
1 262719_at AT1G43590 unknown 1.092 -0.047
2 263402_at AT2G04050 [MATE efflux family protein] 0.729 0.054
3 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.647 0.012
4 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.589 0.039
5 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.522 0.108
6 260522_x_at AT2G41730 unknown 0.512 -0.051
7 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.503 0.037
8 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.478 0.002
9 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 0.444 -0.101
10 263515_at AT2G21640 unknown 0.396 0.129
11 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.365 0.292
12 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 0.354 0.055
13 267559_at AT2G45570 CYP76C2, cytochrome P450, family 76, subfamily C, polypeptide 2 0.353 0.015
14 244970_at ATCG00660 RPL20, ribosomal protein L20 0.350 -0.037
15 257061_at AT3G18250 [Putative membrane lipoprotein] 0.349 -0.039
16 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.341 0.033
17 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.326 -0.079
18 244906_at ATMG00690 ORF240A 0.321 0.026
19 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.317 -0.004
20 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.308 0.072
21 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 0.300 -0.055
22 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.292 -0.001
23 251595_at AT3G57620 [glyoxal oxidase-related protein] 0.282 -0.043
24 246461_at AT5G16930 [AAA-type ATPase family protein] 0.273 0.053
25 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.265 0.017
26 254419_at AT4G21490 NDB3, NAD(P)H dehydrogenase B3 0.264 0.004
27 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.262 -0.030
28 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.260 0.222
29 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.258 -0.142
30 244901_at ATMG00640 ORF25 0.249 0.001
31 265197_at AT2G36750 UGT73C1, UDP-glucosyl transferase 73C1 0.248 0.049
32 244945_at ATMG00110 ABCI2, ATP-binding cassette I2, CCB206, cytochrome C biogenesis 206 0.247 -0.039
33 245712_at AT5G04360 ATLDA, limit dextrinase, ATPU1, PULLULANASE 1, LDA, limit dextrinase, PU1, PULLULANASE 1 0.241 -0.003
34 255430_at AT4G03320 AtTic20-IV, translocon at the inner envelope membrane of chloroplasts 20-IV, Tic20-IV, translocon at the inner envelope membrane of chloroplasts 20-IV 0.239 -0.048
35 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 0.237 -0.066
36 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.236 -0.285
37 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.233 0.102
38 255568_at AT4G01250 AtWRKY22, WRKY22 0.232 -0.140
39 256420_at AT1G33475 [SNARE-like superfamily protein] 0.230 -0.054
40 263853_at AT2G04440 [MutT/nudix family protein] 0.229 0.059
41 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.228 -0.067
42 253824_at AT4G27940 ATMTM1, ARABIDOPSIS MANGANESE TRACKING FACTOR FOR MITOCHONDRIAL SOD2, MTM1, manganese tracking factor for mitochondrial SOD2 0.227 0.010
43 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 0.227 -0.048
44 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.226 -0.073
45 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.226 0.023
46 266658_at AT2G25735 unknown 0.225 0.452
47 249634_at AT5G36840 unknown 0.222 0.057
48 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 0.217 -0.054
49 253265_at AT4G34040 MBR2, MED25 BINDING RING-H2 PROTEIN 2 0.215 -0.062
50 257315_at AT3G30775 AT-POX, ATPDH, ATPOX, ARABIDOPSIS THALIANA PROLINE OXIDASE, ERD5, EARLY RESPONSIVE TO DEHYDRATION 5, PDH1, proline dehydrogenase 1, PRO1, PRODH, PROLINE DEHYDROGENASE 0.213 0.332
51 259167_at AT3G01570 [Oleosin family protein] 0.210 0.031
52 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.209 0.013
53 244921_s_at ATMG01000 ORF114 0.209 0.007
54 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.207 -0.232
55 249889_at AT5G22540 unknown 0.205 0.084
56 247670_at AT5G60190 [Cysteine proteinases superfamily protein] 0.205 -0.038
57 257334_at ATMG01370 ORF111D 0.205 0.054
58 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.199 0.126
59 265169_x_at AT1G23720 [Proline-rich extensin-like family protein] 0.199 0.002
60 247958_at AT5G57070 [hydroxyproline-rich glycoprotein family protein] 0.199 -0.057
61 256715_at AT2G34090 MEE18, maternal effect embryo arrest 18 0.197 0.079
62 249981_at AT5G18510 [Aminotransferase-like, plant mobile domain family protein] 0.196 -0.019
63 251769_at AT3G55950 ATCRR3, CCR3, CRINKLY4 related 3 0.195 0.342
64 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.195 0.047
65 261972_at AT1G64600 [methyltransferases] 0.192 0.050
66 267459_at AT2G33850 unknown -1.054 0.016
67 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.545 0.141
68 254773_at AT4G13410 ATCSLA15, CSLA15, CELLULOSE SYNTHASE LIKE A15 -0.482 1.107
69 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A -0.432 0.761
70 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.427 0.097
71 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.422 0.278
72 266142_at AT2G39030 NATA1, N-acetyltransferase activity 1 -0.410 1.276
73 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 -0.396 0.332
74 263031_at AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 -0.392 0.940
75 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 -0.389 0.359
76 258731_at AT3G11880 unknown -0.380 0.187
77 265984_at AT2G24210 TPS10, terpene synthase 10 -0.332 0.055
78 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -0.326 0.348
79 255527_at AT4G02360 unknown -0.322 1.069
80 261844_at AT1G15940 [Tudor/PWWP/MBT superfamily protein] -0.312 -0.035
81 248467_at AT5G50800 AtSWEET13, SWEET13 -0.308 -0.115
82 251646_at AT3G57780 unknown -0.304 -0.082
83 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.298 -0.022
84 249378_at AT5G40450 unknown -0.291 -0.007
85 254724_at AT4G13630 unknown -0.290 -0.029
86 262891_at AT1G79460 ATKS, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, ATKS1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, GA2, GA REQUIRING 2, KS, KS1, ENT-KAURENE SYNTHASE 1 -0.284 -0.004
87 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.283 0.039
88 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.283 -0.027
89 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 -0.275 0.117
90 249409_at AT5G40340 [Tudor/PWWP/MBT superfamily protein] -0.274 0.081
91 259609_at AT1G52410 AtTSA1, TSA1, TSK-associating protein 1 -0.270 1.079
92 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -0.269 0.494
93 252827_at AT4G39950 CYP79B2, cytochrome P450, family 79, subfamily B, polypeptide 2 -0.259 0.381
94 258143_at AT3G18170 [Glycosyltransferase family 61 protein] -0.257 -0.018
95 248032_at AT5G55860 unknown -0.246 -0.025
96 256741_at AT3G29375 [XH domain-containing protein] -0.246 -0.040
97 263569_at AT2G27170 SMC3, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, TTN7, TITAN7 -0.240 -0.088
98 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.233 0.785
99 250982_at AT5G03150 JKD, JACKDAW -0.232 -0.039
100 258067_at AT3G25980 AtMAD2, MAD2, MITOTIC ARREST-DEFICIENT 2 -0.230 -0.079
101 246759_at AT5G27950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.229 -0.039
102 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] -0.227 0.476
103 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.226 -0.262
104 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 -0.223 -0.010
105 255876_at AT2G40480 unknown -0.223 -0.145
106 247175_at AT5G65280 GCL1, GCR2-like 1 -0.222 0.789
107 250696_at AT5G06790 unknown -0.217 -0.151
108 253024_at AT4G38080 [hydroxyproline-rich glycoprotein family protein] -0.215 -0.010
109 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.211 0.206
110 247604_at AT5G60950 COBL5, COBRA-like protein 5 precursor -0.211 -0.020
111 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 -0.209 0.153
112 249167_at AT5G42860 unknown -0.208 0.079
113 246951_at AT5G04880 [expressed protein] -0.207 0.011
114 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.203 0.074
115 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.200 0.004
116 261151_at AT1G19650 [Sec14p-like phosphatidylinositol transfer family protein] -0.200 0.125
117 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.197 0.140
118 266456_at AT2G22770 NAI1 -0.192 0.499
119 263972_at AT2G42760 unknown -0.192 0.385
120 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.189 0.042
121 245353_at AT4G16000 unknown -0.185 -0.014
122 265448_at AT2G46590 Dof-type zinc finger DNA-binding family protein -0.184 -0.107
123 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.179 1.223
124 255604_at AT4G01080 TBL26, TRICHOME BIREFRINGENCE-LIKE 26 -0.179 0.881
125 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] -0.175 0.810
126 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 -0.175 0.040
127 261421_at AT1G18840 IQD30, IQ-domain 30 -0.174 -0.108
128 257978_at AT3G20860 ATNEK5, NIMA-related kinase 5, NEK5, NIMA-related kinase 5 -0.171 0.010
129 261368_at AT1G53070 [Legume lectin family protein] -0.170 -0.043