4.0:Information of module
rao1-1 3h antimycin A
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009058 biosynthetic process BP 3.279e-09
GO:1901576 organic substance biosynthetic process BP 7.010e-09
GO:0010264 myo-inositol hexakisphosphate biosynthet... BP 7.612e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 5.425e-06
GO:0010243 response to organonitrogen compound BP 1.035e-05
GO:1901700 response to oxygen-containing compound BP 5.482e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rao1-1 3h antimycin A		 Log2 signal ratio
Red/FR Light45min
1 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.614 0.031
2 247463_at AT5G62210 [Embryo-specific protein 3, (ATS3)] 0.488 0.001
3 253309_at AT4G33790 CER4, ECERIFERUM 4, FAR3, FATTY ACID REDUCTASE 3, G7 0.423 0.009
4 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.394 -0.012
5 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 0.393 0.049
6 252629_at AT3G44970 [Cytochrome P450 superfamily protein] 0.392 -0.022
7 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.322 0.063
8 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.316 -0.061
9 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.315 0.003
10 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.302 0.053
11 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL 0.296 -0.036
12 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 0.296 -0.013
13 256577_at AT3G28220 [TRAF-like family protein] 0.294 0.052
14 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 0.292 -0.011
15 249932_at AT5G22390 unknown 0.290 0.007
16 261191_at AT1G32900 GBSS1, granule bound starch synthase 1 0.273 -0.067
17 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.268 -0.010
18 263739_at AT2G21320 BBX18, B-box domain protein 18 0.256 0.044
19 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 0.256 -0.040
20 252677_at AT3G44320 AtNIT3, NITRILASE 3, NIT3, nitrilase 3 0.252 0.006
21 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 0.252 -0.035
22 263664_at AT1G04250 AXR3, AUXIN RESISTANT 3, IAA17, indole-3-acetic acid inducible 17 0.250 0.002
23 257793_at AT3G26960 [Pollen Ole e 1 allergen and extensin family protein] 0.250 -0.044
24 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 0.249 -0.012
25 264872_at AT1G24260 AGL9, AGAMOUS-like 9, SEP3, SEPALLATA3 0.247 0.010
26 248160_at AT5G54470 BBX29, B-box domain protein 29 0.241 -0.010
27 262290_at AT1G70985 [hydroxyproline-rich glycoprotein family protein] 0.237 -0.046
28 264341_at AT1G70270 unknown 0.235 0.054
29 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.234 -0.023
30 257051_at AT3G15270 SPL5, squamosa promoter binding protein-like 5 0.231 0.025
31 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.230 -0.070
32 257858_at AT3G12920 BRG3, BOI-related gene 3 0.220 -0.009
33 265452_at AT2G46510 AIB, ABA-inducible BHLH-type transcription factor, ATAIB, ABA-inducible BHLH-type transcription factor, JAM1, JA-associated MYC2-like 1 0.219 0.015
34 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 0.217 0.007
35 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase 0.215 -0.012
36 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.213 0.033
37 245635_at AT1G25250 AtIDD16, indeterminate(ID)-domain 16, IDD16, indeterminate(ID)-domain 16 0.209 -0.022
38 248807_at AT5G47500 PME5, pectin methylesterase 5 0.208 -0.010
39 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.200 -0.018
40 264692_at AT1G70000 [myb-like transcription factor family protein] 0.199 -0.059
41 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.198 -0.012
42 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 0.196 0.005
43 249035_at AT5G44190 ATGLK2, GLK2, GOLDEN2-like 2, GPRI2, GBF'S PRO-RICH REGION-INTERACTING FACTOR 2 0.195 -0.024
44 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.195 0.003
45 257262_at AT3G21890 BBX31, B-box domain protein 31 0.195 -0.023
46 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 0.194 -0.018
47 252858_at AT4G39770 TPPH, trehalose-6-phosphate phosphatase H 0.193 -0.063
48 249614_at AT5G37300 WSD1 0.193 0.036
49 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 0.193 -0.007
50 251952_at AT3G53650 [Histone superfamily protein] 0.191 -0.009
51 254663_at AT4G18290 KAT2, potassium channel in Arabidopsis thaliana 2 0.190 -0.007
52 245463_at AT4G17030 AT-EXPR, ATEXLB1, expansin-like B1, ATEXPR1, ATHEXP BETA 3.1, EXLB1, expansin-like B1, EXPR 0.188 0.009
53 266395_at AT2G43100 ATLEUD1, IPMI2, isopropylmalate isomerase 2 0.188 0.038
54 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.186 0.065
55 265632_at AT2G14290 unknown 0.183 -0.011
56 246757_at AT5G27940 WPP3, WPP domain protein 3 0.182 0.055
57 247706_at AT5G59480 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.181 0.010
58 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 0.180 -0.034
59 260385_at AT1G74090 ATSOT18, DESULFO-GLUCOSINOLATE SULFOTRANSFERASE 18, ATST5B, ARABIDOPSIS SULFOTRANSFERASE 5B, SOT18, desulfo-glucosinolate sulfotransferase 18 0.177 0.032
60 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] 0.176 -0.033
61 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.176 0.005
62 250633_at AT5G07460 ATMSRA2, ARABIDOPSIS THALIANA METHIONINE SULFOXIDE REDUCTASE 2, PMSR2, peptidemethionine sulfoxide reductase 2 0.176 0.001
63 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 0.176 -0.016
64 253689_at AT4G29770 unknown 0.175 0.033
65 266232_at AT2G02310 AtPP2-B6, phloem protein 2-B6, PP2-B6, phloem protein 2-B6 0.175 -0.012
66 250690_at AT5G06530 ABCG22, ATP-binding cassette G22, AtABCG22, Arabidopsis thaliana ATP-binding cassette G22 0.175 0.039
67 267459_at AT2G33850 unknown -0.927 -0.025
68 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 -0.796 -0.038
69 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.586 -0.027
70 247610_at AT5G60630 unknown -0.414 0.000
71 245447_at AT4G16820 DALL1, DAD1-Like Lipase 1, PLA-I{beta]2, phospholipase A I beta 2 -0.401 0.032
72 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] -0.399 0.001
73 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.381 -0.020
74 247913_at AT5G57510 unknown -0.364 -0.003
75 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 -0.355 0.030
76 248394_at AT5G52070 [Agenet domain-containing protein] -0.355 0.009
77 263401_at AT2G04070 [MATE efflux family protein] -0.352 -0.048
78 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 -0.344 0.031
79 258935_at AT3G10120 unknown -0.337 -0.036
80 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 -0.337 0.023
81 247573_at AT5G61160 AACT1, anthocyanin 5-aromatic acyltransferase 1 -0.318 0.006
82 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.312 -0.024
83 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.305 -0.069
84 260166_at AT1G79840 GL2, GLABRA 2 -0.305 0.007
85 249813_at AT5G23940 DCR, DEFECTIVE IN CUTICULAR RIDGES, EMB3009, EMBRYO DEFECTIVE 3009, PEL3, PERMEABLE LEAVES3 -0.298 -0.028
86 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.296 -0.034
87 258364_at AT3G14225 GLIP4, GDSL-motif lipase 4 -0.294 0.011
88 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.292 0.033
89 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.287 0.014
90 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.287 0.001
91 262213_at AT1G74870 [RING/U-box superfamily protein] -0.285 -0.013
92 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.283 0.046
93 255637_at AT4G00750 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.269 -0.025
94 260567_at AT2G43820 ATSAGT1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, GT, SAGT1, salicylic acid glucosyltransferase 1, SGT1, UDP-glucose:salicylic acid glucosyltransferase 1, UGT74F2, UDP-glucosyltransferase 74F2 -0.258 -0.039
95 258216_at AT3G17980 AtC2, Arabidopsis thaliana C2 domain, AtGAP1, homolog of OsGAP1, C2, C2 domain -0.252 -0.023
96 259766_at AT1G64360 unknown -0.249 0.005
97 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] -0.245 0.047
98 263168_at AT1G03020 [Thioredoxin superfamily protein] -0.243 -0.011
99 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] -0.234 -0.009
100 249260_at AT5G41680 [Protein kinase superfamily protein] -0.232 0.044
101 253057_at AT4G37670 NAGS2, N-acetyl-l-glutamate synthase 2 -0.228 0.005
102 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.228 -0.003
103 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 -0.227 -0.019
104 267451_at AT2G33710 [Integrase-type DNA-binding superfamily protein] -0.227 0.014
105 261476_at AT1G14480 [Ankyrin repeat family protein] -0.227 -0.001
106 256874_at AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 -0.226 -0.012
107 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.221 -0.003
108 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.220 -0.003
109 263795_at AT2G24610 ATCNGC14, cyclic nucleotide-gated channel 14, CNGC14, cyclic nucleotide-gated channel 14 -0.216 0.012
110 247668_at AT5G60100 APRR3, pseudo-response regulator 3, PRR3, pseudo-response regulator 3 -0.216 -0.024
111 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] -0.214 -0.031
112 249558_at AT5G38310 unknown -0.212 -0.033
113 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.208 0.069
114 249915_at AT5G22870 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.206 0.010
115 249221_at AT5G42440 [Protein kinase superfamily protein] -0.205 -0.005
116 261265_at AT1G26800 [RING/U-box superfamily protein] -0.204 0.083
117 258893_at AT3G05660 AtRLP33, receptor like protein 33, RLP33, receptor like protein 33 -0.200 -0.034
118 249790_at AT5G24290 MEB2, MEMBRANE OF ER BODY 2 -0.198 -0.005
119 261474_at AT1G14540 PER4, peroxidase 4 -0.197 -0.156
120 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.197 -0.012
121 260553_at AT2G41800 unknown -0.197 -0.022
122 267289_at AT2G23770 LYK4, LysM-containing receptor-like kinase 4 -0.196 -0.054
123 253812_at AT4G28240 [Wound-responsive family protein] -0.195 -0.018
124 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor -0.194 0.013
125 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 -0.193 -0.010
126 249083_at AT5G44140 ATPHB7, prohibitin 7, PHB7, prohibitin 7 -0.192 0.009
127 253768_at AT4G28550 [Ypt/Rab-GAP domain of gyp1p superfamily protein] -0.191 -0.004
128 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.188 0.001
129 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.187 -0.007
130 257536_at AT3G02800 AtPFA-DSP3, PFA-DSP3, plant and fungi atypical dual-specificity phosphatase 3 -0.187 -0.003
131 262935_at AT1G79410 AtOCT5, organic cation/carnitine transporter5, OCT5, organic cation/carnitine transporter5 -0.186 -0.006