4.0:Information of module
L17 phyA line
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.253e-11
GO:0015979 photosynthesis BP 1.890e-09
GO:0019684 photosynthesis, light reaction BP 3.182e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009814 defense response, incompatible interacti... BP 4.857e-05
GO:0010310 regulation of hydrogen peroxide metaboli... BP 4.783e-04
GO:0009862 systemic acquired resistance, salicylic ... BP 5.581e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
L17 phyA line		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 5 hrs Taking 70 mm of Stump (4dpg)
1 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b 1.377 -1.204
2 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.102 -0.806
3 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.978 -1.108
4 253689_at AT4G29770 unknown 0.972 -1.191
5 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.923 -0.153
6 257354_x_at AT2G23480 unknown 0.923 -0.454
7 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.908 -0.502
8 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.906 -0.528
9 267110_at AT2G14800 unknown 0.863 -1.205
10 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.822 -0.328
11 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.785 -0.174
12 262665_at AT1G14070 FUT7, fucosyltransferase 7 0.770 -0.684
13 246149_at AT5G19890 [Peroxidase superfamily protein] 0.753 -0.637
14 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.707 0.141
15 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.696 -0.957
16 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor 0.674 0.305
17 250425_at AT5G10530 LecRK-IX.1, L-type lectin receptor kinase IX.1 0.667 -0.758
18 258782_at AT3G11750 FOLB1 0.665 -0.848
19 259902_at AT1G74170 AtRLP13, receptor like protein 13, RLP13, receptor like protein 13 0.661 -0.620
20 257872_at AT3G28360 ABCB16, ATP-binding cassette B16, PGP16, P-glycoprotein 16 0.597 -0.617
21 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.590 -0.979
22 244997_at ATCG00170 RPOC2 0.584 -0.262
23 262342_at AT1G64150 [Uncharacterized protein family (UPF0016)] 0.575 -0.825
24 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] 0.569 -0.039
25 250960_at AT5G02940 unknown 0.559 -0.540
26 249071_at AT5G44050 [MATE efflux family protein] 0.546 -0.765
27 245047_at ATCG00020 PSBA, photosystem II reaction center protein A 0.540 -0.258
28 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 0.540 -0.873
29 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 0.537 -0.649
30 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.530 -0.930
31 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 0.530 -0.609
32 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.512 0.113
33 253211_at AT4G34880 [Amidase family protein] 0.505 -0.189
34 244981_at ATCG00770 RPS8, ribosomal protein S8 0.502 -0.371
35 258379_at AT3G16700 [Fumarylacetoacetate (FAA) hydrolase family] 0.495 -0.558
36 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.478 -0.341
37 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.476 -0.646
38 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.465 -0.197
39 258610_at AT3G02875 ILR1, IAA-LEUCINE RESISTANT 1 0.462 -0.316
40 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.460 -0.205
41 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.456 -0.628
42 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.680 0.644
43 262705_at AT1G16260 [Wall-associated kinase family protein] -1.255 0.605
44 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -1.237 1.009
45 248944_at AT5G45500 [RNI-like superfamily protein] -1.221 0.889
46 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 -1.134 0.474
47 264680_at AT1G65510 unknown -1.090 0.474
48 261020_at AT1G26390 [FAD-binding Berberine family protein] -1.089 0.318
49 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -1.041 0.896
50 246888_at AT5G26270 unknown -1.012 0.124
51 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 -0.968 0.415
52 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.957 0.280
53 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.957 0.425
54 260568_at AT2G43570 CHI, chitinase, putative -0.938 0.361
55 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] -0.866 0.738
56 263673_at AT2G04800 unknown -0.811 0.291
57 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 -0.806 -0.119
58 245970_at AT5G20710 BGAL7, beta-galactosidase 7 -0.800 -0.029
59 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.786 0.543
60 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.774 0.434
61 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.738 0.054
62 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.732 0.249
63 247710_at AT5G59260 LecRK-II.1, L-type lectin receptor kinase II.1 -0.714 0.330
64 252659_at AT3G44430 unknown -0.710 0.381
65 248980_at AT5G45090 AtPP2-A7, phloem protein 2-A7, PP2-A7, phloem protein 2-A7 -0.700 0.693
66 249459_at AT5G39580 [Peroxidase superfamily protein] -0.693 0.614
67 262719_at AT1G43590 unknown -0.691 -0.147
68 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.685 0.656
69 249010_at AT5G44580 unknown -0.678 0.129
70 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.678 -0.447
71 245082_at AT2G23270 unknown -0.655 0.230
72 254818_at AT4G12470 AZI1, azelaic acid induced 1 -0.631 -0.841
73 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.606 -0.320
74 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.595 -0.514
75 246743_at AT5G27750 [F-box/FBD-like domains containing protein] -0.577 0.381
76 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.577 0.600
77 257061_at AT3G18250 [Putative membrane lipoprotein] -0.570 -0.109
78 256497_at AT1G31580 CXC750, ECS1 -0.563 0.375
79 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.559 -0.016
80 257059_at AT3G15280 unknown -0.559 0.568
81 252937_at AT4G39180 ATSEC14, ARABIDOPSIS THALIANA SECRETION 14, SEC14, SECRETION 14 -0.549 0.143
82 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.549 0.072