4.0:Information of module
L17 phyA line
In comparison with intact root control help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.253e-11
GO:0015979 photosynthesis BP 1.890e-09
GO:0019684 photosynthesis, light reaction BP 3.182e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009814 defense response, incompatible interacti... BP 4.857e-05
GO:0010310 regulation of hydrogen peroxide metaboli... BP 4.783e-04
GO:0009862 systemic acquired resistance, salicylic ... BP 5.581e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
L17 phyA line		 Log2 signal ratio
intact root control
1 264143_at AT1G79330 AMC6, ATMC5, metacaspase 5, ATMCP2b, metacaspase 2b, MC5, metacaspase 5, MCP2b, metacaspase 2b 1.377 -0.426
2 256489_at AT1G31550 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.102 -0.879
3 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.978 -0.326
4 253689_at AT4G29770 unknown 0.972 -1.394
5 249970_at AT5G19100 [Eukaryotic aspartyl protease family protein] 0.923 -0.922
6 257354_x_at AT2G23480 unknown 0.923 -0.981
7 254582_at AT4G19470 [Leucine-rich repeat (LRR) family protein] 0.908 -0.805
8 259866_at AT1G76640 CML39, CALMODULIN LIKE 39 0.906 -0.777
9 267110_at AT2G14800 unknown 0.863 -1.087
10 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.822 0.106
11 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.785 0.995
12 262665_at AT1G14070 FUT7, fucosyltransferase 7 0.770 -0.338
13 246149_at AT5G19890 [Peroxidase superfamily protein] 0.753 0.560
14 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.707 -0.485
15 244973_at ATCG00690 PSBT, photosystem II reaction center protein T, PSBTC 0.696 -1.396
16 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor 0.674 -0.853
17 250425_at AT5G10530 LecRK-IX.1, L-type lectin receptor kinase IX.1 0.667 -0.897
18 258782_at AT3G11750 FOLB1 0.665 -0.856
19 259902_at AT1G74170 AtRLP13, receptor like protein 13, RLP13, receptor like protein 13 0.661 -0.782
20 257872_at AT3G28360 ABCB16, ATP-binding cassette B16, PGP16, P-glycoprotein 16 0.597 -0.603
21 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.590 -0.310
22 244997_at ATCG00170 RPOC2 0.584 -0.344
23 262342_at AT1G64150 [Uncharacterized protein family (UPF0016)] 0.575 -0.892
24 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] 0.569 -0.172
25 250960_at AT5G02940 unknown 0.559 -0.552
26 249071_at AT5G44050 [MATE efflux family protein] 0.546 -0.940
27 245047_at ATCG00020 PSBA, photosystem II reaction center protein A 0.540 0.431
28 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 0.540 -0.857
29 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 0.537 -0.974
30 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor 0.530 -0.911
31 263841_at AT2G36870 AtXTH32, XTH32, xyloglucan endotransglucosylase/hydrolase 32 0.530 -0.627
32 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.512 -0.431
33 253211_at AT4G34880 [Amidase family protein] 0.505 -0.184
34 244981_at ATCG00770 RPS8, ribosomal protein S8 0.502 -0.068
35 258379_at AT3G16700 [Fumarylacetoacetate (FAA) hydrolase family] 0.495 -0.817
36 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] 0.478 0.003
37 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.476 -1.058
38 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.465 -0.411
39 258610_at AT3G02875 ILR1, IAA-LEUCINE RESISTANT 1 0.462 -0.490
40 247657_at AT5G59845 [Gibberellin-regulated family protein] 0.460 -0.351
41 266423_at AT2G41340 RPB5D, RNA polymerase II fifth largest subunit, D 0.456 -0.747
42 255257_at AT4G05050 UBQ11, ubiquitin 11 -1.680 0.773
43 262705_at AT1G16260 [Wall-associated kinase family protein] -1.255 0.697
44 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -1.237 1.768
45 248944_at AT5G45500 [RNI-like superfamily protein] -1.221 1.291
46 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 -1.134 0.952
47 264680_at AT1G65510 unknown -1.090 1.147
48 261020_at AT1G26390 [FAD-binding Berberine family protein] -1.089 0.164
49 252703_at AT3G43740 [Leucine-rich repeat (LRR) family protein] -1.041 0.526
50 246888_at AT5G26270 unknown -1.012 -0.083
51 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 -0.968 1.295
52 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.957 -0.077
53 266282_at AT2G29220 LecRK-III.1, L-type lectin receptor kinase III.1 -0.957 0.630
54 260568_at AT2G43570 CHI, chitinase, putative -0.938 0.556
55 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] -0.866 1.011
56 263673_at AT2G04800 unknown -0.811 0.654
57 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 -0.806 0.523
58 245970_at AT5G20710 BGAL7, beta-galactosidase 7 -0.800 -0.147
59 261574_at AT1G01190 CYP78A8, cytochrome P450, family 78, subfamily A, polypeptide 8 -0.786 0.381
60 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.774 0.584
61 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.738 0.003
62 250064_at AT5G17890 CHS3, CHILLING SENSITIVE 3, DAR4, DA1-related protein 4 -0.732 0.888
63 247710_at AT5G59260 LecRK-II.1, L-type lectin receptor kinase II.1 -0.714 1.009
64 252659_at AT3G44430 unknown -0.710 0.152
65 248980_at AT5G45090 AtPP2-A7, phloem protein 2-A7, PP2-A7, phloem protein 2-A7 -0.700 0.949
66 249459_at AT5G39580 [Peroxidase superfamily protein] -0.693 0.112
67 262719_at AT1G43590 unknown -0.691 0.024
68 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.685 1.068
69 249010_at AT5G44580 unknown -0.678 0.647
70 256337_at AT1G72060 [serine-type endopeptidase inhibitors] -0.678 0.091
71 245082_at AT2G23270 unknown -0.655 0.103
72 254818_at AT4G12470 AZI1, azelaic acid induced 1 -0.631 0.312
73 261453_at AT1G21130 IGMT4, indole glucosinolate O-methyltransferase 4 -0.606 0.359
74 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.595 -0.496
75 246743_at AT5G27750 [F-box/FBD-like domains containing protein] -0.577 0.159
76 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.577 0.488
77 257061_at AT3G18250 [Putative membrane lipoprotein] -0.570 -0.304
78 256497_at AT1G31580 CXC750, ECS1 -0.563 0.854
79 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.559 0.577
80 257059_at AT3G15280 unknown -0.559 0.516
81 252937_at AT4G39180 ATSEC14, ARABIDOPSIS THALIANA SECRETION 14, SEC14, SECRETION 14 -0.549 0.297
82 245456_at AT4G16950 RPP5, RECOGNITION OF PERONOSPORA PARASITICA 5 -0.549 0.626