4.0:Information of module
ssi2 act1
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042744 hydrogen peroxide catabolic process BP 2.198e-03
GO:0016036 cellular response to phosphate starvatio... BP 5.179e-03
GO:0015979 photosynthesis BP 5.190e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043248 proteasome assembly BP 2.678e-04
GO:0051788 response to misfolded protein BP 2.678e-04
GO:0080129 proteasome core complex assembly BP 1.201e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ssi2 act1		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 251831_at AT3G55140 [Pectin lyase-like superfamily protein] 1.193 -0.658
2 252512_at AT3G46290 HERK1, hercules receptor kinase 1 1.133 -0.188
3 249997_at AT5G18620 CHR17, chromatin remodeling factor17 0.948 -0.052
4 255748_at AT1G32000 unknown 0.937 0.077
5 245723_at AT1G73400 [Pentatricopeptide repeat (PPR) superfamily protein] 0.809 -0.710
6 265900_at AT2G25730 unknown 0.692 0.057
7 246326_at AT1G16590 ATREV7, REV7 0.677 0.044
8 246532_at AT5G15870 [glycosyl hydrolase family 81 protein] 0.672 0.056
9 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 0.625 -0.659
10 266831_at AT2G22830 SQE2, squalene epoxidase 2 0.618 0.011
11 249910_at AT5G22630 ADT5, arogenate dehydratase 5 0.552 0.042
12 256955_at AT3G13390 sks11, SKU5 similar 11 0.536 -0.034
13 251393_at AT3G60640 ATG8G, AUTOPHAGY 8G 0.534 0.023
14 245521_at AT4G15880 ATESD4, ESD4, EARLY IN SHORT DAYS 4 0.532 -0.139
15 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] 0.529 -0.010
16 266973_at AT2G39620 [Pentatricopeptide repeat (PPR) superfamily protein] 0.519 -0.004
17 257770_at AT3G22990 LFR, LEAF AND FLOWER RELATED 0.508 -0.123
18 262417_at AT1G50170 ATSIRB, sirohydrochlorin ferrochelatase B, SIRB, sirohydrochlorin ferrochelatase B 0.506 0.037
19 267254_at AT2G23030 SNRK2-9, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNRK2.9, SNF1-related protein kinase 2.9 0.505 -0.032
20 250085_at AT5G17250 [Alkaline-phosphatase-like family protein] 0.495 0.008
21 250969_at AT5G02740 [Ribosomal protein S24e family protein] 0.490 -0.383
22 253833_at AT4G27790 [Calcium-binding EF hand family protein] 0.467 0.053
23 253698_at AT4G29680 [Alkaline-phosphatase-like family protein] 0.467 -0.838
24 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 0.456 -0.140
25 258794_at AT3G04710 TPR10, tetratricopeptide repeat 10 0.452 -0.000
26 257551_at AT3G13270 unknown 0.451 -0.143
27 252529_at AT3G46490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.441 -0.045
28 247182_at AT5G65410 ATHB25, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 25, HB25, homeobox protein 25, ZFHD2, ZINC FINGER HOMEODOMAIN 2, ZHD1, ZINC FINGER HOMEODOMAIN 1 0.438 -0.097
29 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 0.431 0.075
30 248822_at AT5G47000 [Peroxidase superfamily protein] 0.408 -0.095
31 267146_at AT2G38160 unknown 0.406 -0.192
32 250108_at AT5G15150 ATHB-3, homeobox 3, ATHB3, HAT7, HOMEOBOX FROM ARABIDOPSIS THALIANA 7, HB-3, homeobox 3 0.406 -0.056
33 256733_at AT3G30370 unknown 0.385 -0.179
34 246472_at AT5G17130 [cysteine-type peptidases] 0.385 -0.208
35 249088_at AT5G44230 [Pentatricopeptide repeat (PPR) superfamily protein] 0.382 -0.072
36 264925_at AT1G60670 unknown 0.381 -0.338
37 247025_at AT5G67030 ABA1, ABA DEFICIENT 1, ATABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ATZEP, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NPQ2, NON-PHOTOCHEMICAL QUENCHING 2, ZEP, ZEAXANTHIN EPOXIDASE 0.379 -0.209
38 261757_at AT1G08210 [Eukaryotic aspartyl protease family protein] 0.373 -0.284
39 260742_at AT1G15050 IAA34, indole-3-acetic acid inducible 34 0.368 -0.122
40 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 0.361 0.101
41 253042_at AT4G37550 [Acetamidase/Formamidase family protein] 0.356 0.390
42 245270_at AT4G14960 TUA6, Tubulin alpha-6 0.352 -0.011
43 260439_at AT1G68340 unknown 0.352 0.068
44 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 0.350 0.113
45 254737_at AT4G13840 CER26, ECERIFERUM 26 0.347 0.140
46 261208_at AT1G12930 [ARM repeat superfamily protein] 0.347 0.095
47 257691_at AT3G12660 FLA14, FASCICLIN-like arabinogalactan protein 14 precursor 0.342 -0.004
48 255533_at AT4G02180 [DC1 domain-containing protein] 0.332 0.066
49 253438_at AT4G32520 AtSHMT3, SERINE HYDROXYMETHYLTRANSFERASE 3, SHM3, serine hydroxymethyltransferase 3 0.329 -0.353
50 260577_at AT2G47340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.328 0.068
51 264506_at AT1G09560 GLP5, germin-like protein 5, PDGLP1, PLASMODESMAL GERMIN-LIKE PROTEIN 1 0.327 0.099
52 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.326 -0.142
53 245975_at AT5G13070 [MSF1-like family protein] 0.325 -0.083
54 266716_at AT2G46820 CURT1B, CURVATURE THYLAKOID 1B, PSAP, PSI-P, photosystem I P subunit, PTAC8, PLASTID TRANSCRIPTIONALLY ACTIVE 8, TMP14, THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA 0.325 0.076
55 246834_at AT5G26630 [MADS-box transcription factor family protein] 0.320 0.273
56 261540_at AT1G63610 unknown 0.319 -0.013
57 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.318 -0.083
58 251133_at AT5G01240 LAX1, like AUXIN RESISTANT 1 0.315 0.033
59 261241_at AT1G32950 [Subtilase family protein] 0.313 -0.364
60 259893_at AT1G71390 AtRLP11, receptor like protein 11, RLP11, receptor like protein 11 0.310 -0.076
61 261342_at AT1G52950 [Nucleic acid-binding, OB-fold-like protein] 0.307 0.534
62 259825_at AT1G66260 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.305 0.116
63 248907_at AT5G46340 RWA1, REDUCED WALL ACETYLATION 1 0.305 0.057
64 249057_at AT5G44480 DUR, DEFECTIVE UGE IN ROOT -0.989 0.072
65 251495_at AT3G59020 [ARM repeat superfamily protein] -0.963 0.012
66 252881_at AT4G39610 unknown -0.899 -0.049
67 247556_at AT5G61040 unknown -0.884 -0.152
68 263625_at AT2G04920 [F-box and associated interaction domains-containing protein] -0.862 -0.507
69 259799_at AT1G72290 [Kunitz family trypsin and protease inhibitor protein] -0.854 0.398
70 250800_at AT5G05370 [Cytochrome b-c1 complex, subunit 8 protein] -0.830 0.636
71 245658_at AT1G28270 AtRALF4, RALFL4, ralf-like 4 -0.792 -0.028
72 266845_at AT2G26110 unknown -0.765 -0.372
73 262483_at AT1G17220 FUG1, fu-gaeri1 -0.763 -0.113
74 258147_at AT3G18070 BGLU43, beta glucosidase 43 -0.747 -0.339
75 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] -0.742 0.140
76 267055_at AT2G38360 PRA1.B4, prenylated RAB acceptor 1.B4 -0.690 0.100
77 249115_at AT5G43810 AGO10, ARGONAUTE 10, PNH, PINHEAD, ZLL, ZWILLE -0.686 -0.163
78 251253_at AT3G62240 [RING/U-box superfamily protein] -0.670 0.069
79 251588_at AT3G58090 [Disease resistance-responsive (dirigent-like protein) family protein] -0.663 -0.071
80 264043_at AT2G22490 ATCYCD2;1, CYCD2;1, Cyclin D2;1 -0.646 0.069
81 249742_at AT5G24490 [30S ribosomal protein, putative] -0.622 -0.225
82 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.619 -0.568
83 247795_at AT5G58620 TZF9, tandem zinc finger protein 9 -0.615 -0.154
84 256920_at AT3G18980 ETP1, EIN2 targeting protein1 -0.614 -0.159
85 256319_at AT1G35910 TPPD, trehalose-6-phosphate phosphatase D -0.610 -0.250
86 264304_at AT1G78895 [Reticulon family protein] -0.598 -0.048
87 250195_at AT5G14560 unknown -0.593 0.119
88 247687_at AT5G59740 [UDP-N-acetylglucosamine (UAA) transporter family] -0.591 -0.009
89 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 -0.585 0.294
90 249990_at AT5G18540 unknown -0.574 0.140
91 248567_at AT5G49750 [Leucine-rich repeat (LRR) family protein] -0.570 -0.313
92 259276_at AT3G01190 [Peroxidase superfamily protein] -0.570 0.040
93 250205_at AT5G14020 [Endosomal targeting BRO1-like domain-containing protein] -0.568 -0.167
94 262820_at AT1G11680 CYP51, CYTOCHROME P450 51, CYP51A2, CYTOCHROME P450 51A2, CYP51G1, CYTOCHROME P450 51G1, EMB1738, embryo defective 1738 -0.565 -0.044
95 254610_at AT4G18890 BEH3, BES1/BZR1 homolog 3 -0.550 -0.299
96 262352_at AT1G64250 [Mutator-like transposase family, has a 2.2e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.538 -0.038
97 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 -0.535 0.146
98 262718_at AT1G43570 unknown -0.535 -0.285
99 261418_at AT1G07830 [ribosomal protein L29 family protein] -0.532 0.006
100 247824_at AT5G58460 ATCHX25, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 25, CHX25, cation/H+ exchanger 25 -0.524 -0.151
101 266231_at AT2G02220 ATPSKR1, PHYTOSULFOKIN RECEPTOR 1, PSKR1, phytosulfokin receptor 1 -0.518 -0.289
102 264306_at AT1G78890 unknown -0.513 0.150
103 258004_at AT3G29020 AtMYB110, myb domain protein 110, MYB110, myb domain protein 110 -0.501 -0.027
104 253092_at AT4G37380 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.500 -0.213
105 247806_at AT5G58270 ABCB25, ATP-binding cassette B25, ATATM3, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATM3, ABC transporter of the mitochondrion 3, STA1, STARIK 1 -0.498 0.085
106 255577_at AT4G01410 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.495 -0.006
107 265282_at AT2G20380 [Galactose oxidase/kelch repeat superfamily protein] -0.494 0.081
108 249056_at AT5G44470 unknown -0.492 0.058
109 251390_at AT3G60860 [SEC7-like guanine nucleotide exchange family protein] -0.489 0.326
110 253252_at AT4G34740 ASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATASE2, GLN phosphoribosyl pyrophosphate amidotransferase 2, ATPURF2, CIA1, CHLOROPLAST IMPORT APPARATUS 1, DOV1, DIFFERENTIAL DEVELOPMENT OF VASCULAR ASSOCIATED CELLS -0.489 0.412
111 249260_at AT5G41680 [Protein kinase superfamily protein] -0.487 -0.022
112 249049_at AT5G44340 TUB4, tubulin beta chain 4 -0.487 -0.035
113 265194_at AT1G05010 ACO4, ethylene forming enzyme, EAT1, EFE, ethylene-forming enzyme -0.487 0.135
114 249904_at AT5G22700 [F-box/RNI-like/FBD-like domains-containing protein] -0.483 -0.535
115 245780_at AT1G45688 unknown -0.467 -0.179
116 265976_at AT2G11120 [pseudogene] -0.466 0.323
117 257621_at AT3G20410 CPK9, calmodulin-domain protein kinase 9 -0.464 0.213
118 251945_at AT3G53520 ATUXS1, UXS1, UDP-glucuronic acid decarboxylase 1 -0.463 0.193
119 251795_at AT3G55390 [Uncharacterised protein family (UPF0497)] -0.461 0.199
120 258501_at AT3G06780 [glycine-rich protein] -0.457 0.148
121 261473_at AT1G14490 AHL28, AT-hook motif nuclear localized protein 28 -0.453 -0.156
122 265813_at AT2G18060 ANAC037, Arabidopsis NAC domain containing protein 37, VND1, vascular related NAC-domain protein 1 -0.444 0.140
123 245781_at AT1G45976 SBP1, S-ribonuclease binding protein 1 -0.439 0.205
124 256900_at AT3G24670 [Pectin lyase-like superfamily protein] -0.438 -0.432
125 255410_at AT4G03100 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] -0.426 0.043