4.0:Information of module
12 hour 7606596
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009688 abscisic acid biosynthetic process BP 7.490e-03
GO:0043289 apocarotenoid biosynthetic process BP 7.490e-03
GO:1902645 tertiary alcohol biosynthetic process BP 7.490e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0007140 male meiosis BP 3.392e-04
GO:0006814 sodium ion transport BP 6.786e-04
GO:0034654 nucleobase-containing compound biosynthe... BP 8.753e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
12 hour 7606596		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254674_at AT4G18450 [Integrase-type DNA-binding superfamily protein] 0.527 0.106
2 258008_at AT3G19430 [late embryogenesis abundant protein-related / LEA protein-related] 0.440 0.078
3 250762_at AT5G05990 [Mitochondrial glycoprotein family protein] 0.345 0.078
4 251588_at AT3G58090 [Disease resistance-responsive (dirigent-like protein) family protein] 0.309 -0.071
5 262664_at AT1G13970 unknown 0.271 -0.046
6 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 0.250 -0.216
7 245000_at ATCG00210 YCF6 0.208 0.098
8 264426_at AT1G61760 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.192 -0.044
9 244996_at ATCG00160 RPS2, ribosomal protein S2 0.190 0.073
10 266916_at AT2G45860 unknown 0.188 -0.214
11 267581_at AT2G41980 [Protein with RING/U-box and TRAF-like domains] 0.186 0.073
12 247409_at AT5G62980 FOLB2 0.169 0.188
13 264865_at AT1G24120 ARL1, ARG1-like 1 0.164 -0.367
14 253432_at AT4G32450 MEF8S, MEF8 similar 0.163 -0.006
15 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 0.160 0.231
16 256957_at AT3G13420 unknown 0.148 0.539
17 246326_at AT1G16590 ATREV7, REV7 0.147 0.044
18 246014_at AT5G10680 [calmodulin-binding protein-related] 0.144 -0.203
19 248720_at AT5G47750 D6PKL2, D6 protein kinase like 2, PK5 0.143 0.106
20 249498_at AT5G39230 [TFIIB zinc-binding protein] 0.142 -0.434
21 264077_at AT2G28560 ATRAD51B, RAD51B 0.138 0.154
22 248015_at AT5G56370 [F-box/RNI-like/FBD-like domains-containing protein] 0.123 0.319
23 267086_at AT2G32630 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.123 -0.062
24 255137_at AT4G08370 [Proline-rich extensin-like family protein] 0.121 -0.613
25 250808_at AT5G05150 ATATG18E, ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, ATG18E, autophagy-related gene 18E, G18E, autophagy-related gene 18E 0.120 -0.087
26 258309_at AT3G30585 [Mutator-like transposase family, has a 2.8e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.118 -0.109
27 249026_at AT5G44785 OSB3, organellar single-stranded DNA binding protein 3 0.116 0.144
28 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] 0.112 0.155
29 259495_at AT1G15890 [Disease resistance protein (CC-NBS-LRR class) family] 0.109 -0.348
30 250176_at AT5G14400 CYP724A1, cytochrome P450, family 724, subfamily A, polypeptide 1 0.108 0.092
31 267618_at AT2G26760 CYCB1;4, Cyclin B1;4 0.105 0.084
32 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] 0.105 -0.113
33 265353_at AT2G16800 [high-affinity nickel-transport family protein] 0.102 0.006
34 264690_at AT1G70060 SNL4, SIN3-like 4 0.099 -0.093
35 259698_at AT1G68930 [pentatricopeptide (PPR) repeat-containing protein] 0.098 -0.123
36 267141_at AT2G38090 [Duplicated homeodomain-like superfamily protein] 0.087 0.014
37 260153_at AT1G52760 LysoPL2, lysophospholipase 2 0.085 -0.189
38 263393_at AT2G10500 unknown 0.084 -0.208
39 262744_at AT1G28680 [HXXXD-type acyl-transferase family protein] 0.084 -0.026
40 249393_at AT5G40170 AtRLP54, receptor like protein 54, RLP54, receptor like protein 54 0.082 0.129
41 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.082 -0.076
42 260157_at AT1G52930 [Ribosomal RNA processing Brix domain protein] 0.082 0.447
43 251865_at AT3G54930 [Protein phosphatase 2A regulatory B subunit family protein] 0.077 0.115
44 260301_at AT1G80290 [Nucleotide-diphospho-sugar transferases superfamily protein] 0.076 -0.110
45 250962_at AT5G02990 [Galactose oxidase/kelch repeat superfamily protein] 0.075 -0.106
46 265116_at AT1G62480 [Vacuolar calcium-binding protein-related] 0.065 0.109
47 265831_at AT2G14460 unknown 0.065 -0.054
48 254966_at AT4G11110 SPA2, SPA1-related 2 0.065 0.083
49 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.064 0.073
50 258440_at AT3G17250 [Protein phosphatase 2C family protein] -0.161 -0.066
51 263835_at AT2G40290 [Eukaryotic translation initiation factor 2 subunit 1] -0.158 -0.211
52 251158_at AT3G63150 ATCBG, CALCIUM BINDING GTP-ASE, MIRO2, MIRO-related GTP-ase 2 -0.157 0.239
53 262441_at AT1G47720 OSB1, Organellar Single-stranded -0.155 -0.066
54 262063_at AT1G80000 [CASC3/Barentsz eIF4AIII binding] -0.140 -0.122
55 248379_at AT5G51700 ATRAR1, PBS2, PPHB SUSCEPTIBLE 2, RAR1, Required for Mla12 resistance 1, RPR2 -0.134 0.031
56 251527_at AT3G58650 TRM7, TON1 Recruiting Motif 7 -0.134 -0.030
57 261563_at AT1G01630 [Sec14p-like phosphatidylinositol transfer family protein] -0.129 0.104
58 262845_at AT1G14740 TTA1, TITANIA 1 -0.120 0.253
59 258242_at AT3G27640 [Transducin/WD40 repeat-like superfamily protein] -0.120 0.042
60 266881_at AT2G44680 CKB4, casein kinase II beta subunit 4 -0.118 -0.284
61 267242_at AT2G02670 [pseudogene] -0.115 -0.152
62 256606_at AT3G32960 unknown -0.113 -0.209
63 245779_at AT1G73510 unknown -0.112 -0.128
64 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] -0.111 -0.101
65 261084_at AT1G07440 [NAD(P)-binding Rossmann-fold superfamily protein] -0.111 -0.126
66 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.111 0.615
67 262673_at AT1G76060 EMB1793, EMBRYO DEFECTIVE 1793 -0.111 -0.072
68 266838_at AT2G25980 [Mannose-binding lectin superfamily protein] -0.109 -0.210
69 250998_at AT5G02620 ANK1, ankyrin-like1, ATANK1 -0.107 0.152
70 263155_at AT1G54140 TAF9, TBP-ASSOCIATED FACTOR 9, TAFII21, TATA binding protein associated factor 21kDa subunit -0.105 -0.038
71 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] -0.105 0.191
72 264981_at AT1G27160 [valyl-tRNA synthetase / valine--tRNA ligase-related] -0.105 0.028
73 258491_at AT3G02700 [NC domain-containing protein-related] -0.105 0.094
74 255129_at AT4G08290 UMAMIT20, Usually multiple acids move in and out Transporters 20 -0.104 0.027
75 247462_at AT5G62080 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.103 -0.093
76 264917_at AT1G60500 DRP4C, Dynamin related protein 4C -0.101 -0.133
77 245342_at AT4G16720 [Ribosomal protein L23/L15e family protein] -0.099 0.194
78 253889_at AT4G27760 FEY, FOREVER YOUNG, FEY3 -0.098 0.123
79 264674_at AT1G09815 POLD4, polymerase delta 4 -0.098 0.071
80 262700_at AT1G76020 [Thioredoxin superfamily protein] -0.098 0.157
81 251379_at AT3G60680 unknown -0.097 0.108
82 267220_at AT2G02500 ATMEPCT, ISPD, MCT, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE -0.096 -0.222
83 244966_at ATCG00600 PETG -0.096 0.181
84 245429_at AT4G17580 [Bax inhibitor-1 family protein] -0.096 0.020
85 266460_at AT2G47930 AGP26, arabinogalactan protein 26, ATAGP26, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEIN 26 -0.095 0.026
86 260791_at AT1G06250 [alpha/beta-Hydrolases superfamily protein] -0.094 -0.103
87 267543_at AT2G32730 [26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit] -0.093 -0.178
88 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] -0.093 -0.051
89 263410_at AT2G04039 unknown -0.093 -0.015
90 260790_at AT1G06240 unknown -0.093 0.022
91 253981_at AT4G26670 [Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein] -0.092 -0.026
92 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 -0.091 0.266
93 253494_at AT4G31830 unknown -0.091 -0.117
94 261136_at AT1G19600 [pfkB-like carbohydrate kinase family protein] -0.091 -0.330
95 261179_at AT1G04985 unknown -0.091 -0.322
96 257064_at AT3G18260 [Reticulon family protein] -0.091 -0.050
97 260518_at AT1G51410 [NAD(P)-binding Rossmann-fold superfamily protein] -0.091 -0.014