4.0:Information of module
35S:ORE1-protoplast 6h
In comparison with GO5; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 3.621e-05
GO:0031669 cellular response to nutrient levels BP 5.392e-05
GO:0031667 response to nutrient levels BP 9.099e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901566 organonitrogen compound biosynthetic pro... BP 3.619e-13
GO:1901564 organonitrogen compound metabolic proces... BP 9.182e-12
GO:0009072 aromatic amino acid family metabolic pro... BP 2.588e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S:ORE1-protoplast 6h		 Log2 signal ratio
GO5; harvested 8h continiously maintained in high CO2;
1 257944_at AT3G21850 ASK9, SKP1-like 9, SK9, SKP1-like 9 1.754 -0.043
2 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 1.635 -0.008
3 257943_at AT3G21840 ASK7, SKP1-like 7, SK7, SKP1-like 7 1.450 -0.049
4 257942_at AT3G21830 ASK8, SKP1-like 8, SK8, SKP1-like 8 1.449 0.006
5 254629_at AT4G18425 unknown 1.439 -0.034
6 255345_at AT4G04460 [Saposin-like aspartyl protease family protein] 1.414 0.004
7 262356_at AT1G73000 PYL3, PYR1-like 3, RCAR13, regulatory components of ABA receptor 13 1.402 0.007
8 261243_at AT1G20180 unknown 1.343 0.039
9 263689_at AT1G26820 RNS3, ribonuclease 3 1.341 -0.065
10 263282_at AT2G14095 unknown 1.336 -0.020
11 245697_at AT5G04200 AtMC9, metacaspase 9, AtMCP2f, metacaspase 2f, MC9, metacaspase 9, MCP2f, metacaspase 2f 1.331 -0.008
12 267343_at AT2G44260 unknown 1.288 -0.014
13 253289_at AT4G34320 unknown 1.200 0.022
14 252004_at AT3G52780 ATPAP20, PAP20 1.183 0.011
15 250535_at AT5G08480 [VQ motif-containing protein] 1.090 -0.053
16 258960_at AT3G10590 [Duplicated homeodomain-like superfamily protein] 1.067 -0.037
17 246498_at AT5G16230 [Plant stearoyl-acyl-carrier-protein desaturase family protein] 1.064 0.042
18 248168_at AT5G54570 BGLU41, beta glucosidase 41 1.042 0.030
19 247091_at AT5G66390 PRX72, PEROXIDASE 72 1.029 0.013
20 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 1.027 -0.047
21 260845_at AT1G17310 [MADS-box transcription factor family protein] 1.023 0.000
22 256825_at AT3G22120 CWLP, cell wall-plasma membrane linker protein 0.991 0.013
23 264144_at AT1G79320 AtMC6, metacaspase 6, AtMCP2c, metacaspase 2c, MC6, metacaspase 6, MCP2c, metacaspase 2c 0.979 -0.068
24 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.972 -0.017
25 266849_at AT2G25940 ALPHA-VPE, alpha-vacuolar processing enzyme, ALPHAVPE 0.970 0.059
26 247324_at AT5G64190 unknown 0.936 0.016
27 245705_at AT5G04390 [C2H2-type zinc finger family protein] 0.897 -0.041
28 264532_at AT1G55740 AtSIP1, seed imbibition 1, RS1, raffinose synthase 1, SIP1, seed imbibition 1 0.894 -0.003
29 247965_at AT5G56540 AGP14, arabinogalactan protein 14, ATAGP14 0.892 -0.009
30 249569_at AT5G38070 [RING/FYVE/PHD zinc finger superfamily protein] 0.886 0.015
31 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.875 -0.072
32 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.873 0.035
33 254956_at AT4G10850 AtSWEET7, SWEET7 0.869 0.047
34 250949_at AT5G03510 [C2H2-type zinc finger family protein] 0.867 0.032
35 257580_at AT3G06210 [ARM repeat superfamily protein] 0.857 -0.020
36 264505_at AT1G09380 UMAMIT25, Usually multiple acids move in and out Transporters 25 0.848 0.036
37 266865_at AT2G29980 AtFAD3, FAD3, fatty acid desaturase 3 0.846 0.011
38 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.842 0.002
39 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.839 0.034
40 267119_at AT2G32610 ATCSLB01, cellulose synthase-like B1, ATCSLB1, CELLULOSE SYNTHASE LIKE B1, CSLB01, CELLULOSE SYNTHASE LIKE B1, CSLB01, cellulose synthase-like B1 0.836 -0.023
41 256789_at AT3G13672 SINA2 0.816 0.057
42 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] 0.809 0.010
43 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 0.808 0.010
44 262549_at AT1G31290 AGO3, ARGONAUTE 3 0.807 0.091
45 261366_at AT1G53100 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.802 -0.028
46 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] 0.801 0.093
47 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 0.794 0.016
48 260492_at AT2G41850 ADPG2, ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, PGAZAT, polygalacturonase abscission zone A. thaliana 0.787 0.006
49 245993_at AT5G20700 unknown 0.786 -0.004
50 265539_at AT2G15830 unknown 0.784 0.023
51 265582_at AT2G20030 [RING/U-box superfamily protein] 0.778 -0.015
52 260582_at AT2G47200 unknown 0.774 -0.013
53 260887_at AT1G29160 [Dof-type zinc finger DNA-binding family protein] 0.770 -0.031
54 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B 0.759 0.002
55 249797_at AT5G23750 [Remorin family protein] 0.751 0.002
56 266591_at AT2G46225 ABIL1, ABI-1-like 1 0.743 0.005
57 252220_at AT3G49940 LBD38, LOB domain-containing protein 38 0.738 0.018
58 252920_at AT4G39000 AtGH9B17, glycosyl hydrolase 9B17, GH9B17, glycosyl hydrolase 9B17 0.726 -0.021
59 248761_at AT5G47635 [Pollen Ole e 1 allergen and extensin family protein] 0.726 0.035
60 255607_at AT4G01130 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.673 0.016
61 260109_at AT1G63260 TET10, tetraspanin10 0.660 0.031
62 247985_at AT5G56790 [Protein kinase superfamily protein] 0.652 0.013
63 259014_at AT3G07320 [O-Glycosyl hydrolases family 17 protein] 0.635 -0.007
64 262640_at AT1G62760 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.635 0.022
65 249794_at AT5G23530 AtCXE18, carboxyesterase 18, CXE18, carboxyesterase 18 0.634 0.058
66 249564_at AT5G38400 unknown 0.630 0.026
67 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 0.628 -0.056
68 267058_at AT2G32510 MAPKKK17, mitogen-activated protein kinase kinase kinase 17 0.624 -0.034
69 266756_at AT2G46950 CYP709B2, cytochrome P450, family 709, subfamily B, polypeptide 2 0.618 -0.072
70 262865_at AT1G64930 CYP89A7, cytochrome P450, family 87, subfamily A, polypeptide 7 0.614 0.013
71 262478_at AT1G11170 unknown 0.613 0.024
72 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.609 0.012
73 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 0.605 -0.060
74 264562_at AT1G55760 [BTB/POZ domain-containing protein] 0.599 0.026
75 261016_at AT1G26560 BGLU40, beta glucosidase 40 0.593 -0.067
76 259308_at AT3G05180 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.591 -0.006
77 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.562 0.025
78 246799_at AT5G26940 DPD1, defective in pollen organelle DNA degradation1 0.546 0.014
79 262244_at AT1G48260 CIPK17, CBL-interacting protein kinase 17, SnRK3.21, SNF1-RELATED PROTEIN KINASE 3.21 0.540 -0.022
80 251456_at AT3G60120 BGLU27, beta glucosidase 27 -0.456 -0.024
81 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.443 -0.107
82 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.410 0.457
83 257950_at AT3G21780 UGT71B6, UDP-glucosyl transferase 71B6 -0.349 -0.020
84 265817_at AT2G18050 HIS1-3, histone H1-3 -0.292 0.001
85 252533_at AT3G46110 [LOCATED IN: plasma membrane] -0.277 0.010
86 260804_at AT1G78410 [VQ motif-containing protein] -0.254 -0.029
87 256753_at AT3G27160 GHS1, GLUCOSE HYPERSENSITIVE 1 -0.248 -0.003
88 255110_at AT4G08770 Prx37, peroxidase 37 -0.245 -0.237
89 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 -0.240 -0.091
90 249860_at AT5G22860 [Serine carboxypeptidase S28 family protein] -0.240 0.016
91 252032_at AT3G52150 PSRP2, plastid-specific ribosomal protein 2 -0.218 -0.007
92 261521_at AT1G71830 ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1, SERK1, somatic embryogenesis receptor-like kinase 1 -0.218 0.051
93 263736_at AT1G60000 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.213 -0.009
94 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.211 -0.025
95 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 -0.207 0.038
96 258369_at AT3G14310 ATPME3, pectin methylesterase 3, OZS2, OVERLY ZINC SENSITIVE 2, PME3, pectin methylesterase 3 -0.204 0.001
97 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 -0.200 -0.065
98 252212_at AT3G50310 MAPKKK20, mitogen-activated protein kinase kinase kinase 20, MKKK20, MAPKK kinase 20 -0.198 0.035
99 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 -0.196 0.115
100 263698_at AT1G31100 [non-LTR retrotransposon family (LINE), has a 3.7e-35 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] -0.192 -0.055
101 249010_at AT5G44580 unknown -0.191 -0.007
102 251100_at AT5G01670 [NAD(P)-linked oxidoreductase superfamily protein] -0.186 -0.054
103 260841_at AT1G29195 unknown -0.185 -0.038
104 266993_at AT2G39210 [Major facilitator superfamily protein] -0.182 -0.060
105 252230_at AT3G49810 [ARM repeat superfamily protein] -0.179 0.017
106 248205_at AT5G54300 unknown -0.177 -0.023
107 264837_at AT1G03600 PSB27 -0.176 0.017
108 253665_at AT4G30230 unknown -0.176 -0.059
109 248706_at AT5G48530 unknown -0.175 0.072
110 258100_at AT3G23550 [MATE efflux family protein] -0.175 0.042
111 259439_at AT1G01480 ACS2, 1-amino-cyclopropane-1-carboxylate synthase 2, AT-ACC2 -0.175 0.014
112 264901_at AT1G23090 AST91, sulfate transporter 91, SULTR3;3 -0.175 0.021
113 252810_at AT3G42440 unknown -0.172 -0.000
114 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 -0.171 -0.041
115 249335_at AT5G41010 NRPB12, NRPD12, NRPE12 -0.171 -0.005
116 249489_at AT5G39090 [HXXXD-type acyl-transferase family protein] -0.168 -0.016
117 248169_at AT5G54610 ANK, ankyrin, BDA1, bian da 2 (becoming big in Chinese) -0.166 -0.063
118 267537_at AT2G41880 AGK1, GK-1, guanylate kinase 1 -0.166 0.002
119 249943_at AT5G22280 unknown -0.166 0.021
120 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 -0.162 0.005
121 247940_at AT5G57190 PSD2, phosphatidylserine decarboxylase 2 -0.161 -0.059
122 257925_at AT3G23170 unknown -0.160 0.063
123 258055_at AT3G16250 NDF4, NDH-dependent cyclic electron flow 1, PnsB3, Photosynthetic NDH subcomplex B 3 -0.159 -0.026
124 263209_at AT1G10522 PRIN2, PLASTID REDOX INSENSITIVE 2 -0.158 -0.030
125 266751_at AT2G47020 [Peptide chain release factor 1] -0.157 0.038
126 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 -0.157 -0.253
127 257583_at AT1G66480 [plastid movement impaired 2 (PMI2)] -0.157 -0.021
128 247447_at AT5G62730 [Major facilitator superfamily protein] -0.157 -0.038
129 262788_at AT1G10690 unknown -0.157 -0.064
130 266035_at AT2G05990 ENR1, ENOYL-ACP REDUCTASE 1, MOD1, MOSAIC DEATH 1 -0.155 0.045
131 252250_at AT3G49790 [Carbohydrate-binding protein] -0.154 0.037
132 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.153 -0.299
133 262049_at AT1G80180 unknown -0.152 -0.018
134 264396_at AT1G12050 AtFAH, FAH, fumarylacetoacetate hydrolase, SSCD1, short-day sensitive cell deathshort-day sensitive cell deathshort-day sensitive cell death 111 -0.150 -0.021
135 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 -0.149 -0.007
136 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.149 -0.006
137 254200_at AT4G24110 unknown -0.148 -0.011
138 259840_at AT1G52230 PSAH-2, PHOTOSYSTEM I SUBUNIT H-2, PSAH2, photosystem I subunit H2, PSI-H -0.148 0.003
139 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.146 0.195
140 263679_at AT1G59990 EMB3108, EMBRYO DEFECTIVE 3108, HS3, HEAVY SEED 3, RH22, RNA helicase 22 -0.146 -0.002
141 255224_at AT4G05400 [copper ion binding] -0.146 0.012
142 257071_at AT3G28180 ATCSLC04, Cellulose-synthase-like C4, ATCSLC4, CSLC04, CSLC04, Cellulose-synthase-like C4, CSLC4, CELLULOSE-SYNTHASE LIKE C4 -0.145 0.000
143 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 -0.145 0.015
144 266896_at AT2G45810 [DEA(D/H)-box RNA helicase family protein] -0.145 0.006
145 266601_at AT2G46060 [transmembrane protein-related] -0.145 0.006
146 260055_at AT1G78150 unknown -0.144 0.006
147 253173_at AT4G35110 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.143 -0.093
148 255623_at AT4G01310 [Ribosomal L5P family protein] -0.142 0.014
149 265620_at AT2G27310 [F-box family protein] -0.141 -0.016
150 262946_at AT1G79390 unknown -0.141 0.005
151 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.140 -0.021
152 250110_at AT5G15350 AtENODL17, ENODL17, early nodulin-like protein 17 -0.139 0.031
153 262544_at AT1G15420 unknown -0.139 0.026
154 247215_at AT5G64905 PROPEP3, elicitor peptide 3 precursor -0.139 -0.098
155 249242_at AT5G42250 [Zinc-binding alcohol dehydrogenase family protein] -0.137 0.022
156 258436_at AT3G16720 ATL2, TOXICOS EN LEVADURA 2, TL2, TOXICOS EN LEVADURA 2 -0.137 0.029
157 266223_at AT2G28790 [Pathogenesis-related thaumatin superfamily protein] -0.137 -0.070