4.0:Information of module
CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0097305 response to alcohol BP 1.818e-08
GO:0042221 response to chemical BP 3.655e-08
GO:0033993 response to lipid BP 7.510e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016143 S-glycoside metabolic process BP 2.727e-08
GO:0019757 glycosinolate metabolic process BP 2.727e-08
GO:0019760 glucosinolate metabolic process BP 2.727e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 22 hrs Taking 70 mm of Stump (4dpg)
1 250099_at AT5G17300 RVE1, REVEILLE 1 0.985 -0.548
2 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.947 -0.373
3 256602_at AT3G28310 unknown 0.899 0.766
4 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.871 0.416
5 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.837 -0.739
6 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.834 -0.094
7 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.793 0.373
8 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.790 -0.192
9 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.742 0.616
10 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.703 0.587
11 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.701 -0.372
12 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.686 0.671
13 251753_at AT3G55760 unknown 0.672 0.461
14 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.658 0.266
15 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.656 -0.423
16 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.646 -0.595
17 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.640 0.774
18 257333_at ATMG01360 COX1, cytochrome oxidase 0.631 0.019
19 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.627 -0.147
20 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.625 0.657
21 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] 0.610 0.219
22 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.604 -0.632
23 248649_at AT5G49240 APRR4, pseudo-response regulator 4, PRR4, PSEUDO-RESPONSE REGULATOR 4 0.594 -0.353
24 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.588 0.875
25 263789_at AT2G24560 [GDSL-like Lipase/Acylhydrolase family protein] 0.584 0.549
26 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.577 0.600
27 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.575 -1.135
28 263309_at AT2G10370 unknown 0.574 -1.295
29 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 0.573 0.215
30 261971_at AT1G65990 [type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein] 0.573 -0.383
31 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.572 -0.888
32 262103_at AT1G02940 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5, glutathione S-transferase (class phi) 5 0.571 -0.096
33 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] 0.563 0.443
34 255654_at AT4G00970 CRK41, cysteine-rich RLK (RECEPTOR-like protein kinase) 41 0.557 -1.054
35 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.547 -0.298
36 259373_at AT1G69160 unknown 0.543 -0.833
37 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.538 -0.014
38 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 0.534 -0.782
39 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a 0.533 -0.085
40 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.531 0.748
41 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.531 1.203
42 260264_at AT1G68500 unknown 0.530 -0.183
43 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.527 -1.272
44 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] 0.525 -0.061
45 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.517 -0.529
46 247474_at AT5G62280 unknown 0.513 -0.111
47 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.512 -0.196
48 246886_at AT5G26240 ATCLC-D, CLC-D, chloride channel D 0.509 0.863
49 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.508 -0.113
50 249415_at AT5G39660 CDF2, cycling DOF factor 2 0.503 0.519
51 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.503 0.333
52 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.503 0.973
53 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.502 0.556
54 253425_at AT4G32190 [Myosin heavy chain-related protein] 0.502 -1.200
55 245076_at AT2G23170 GH3.3 0.498 0.080
56 249553_at AT5G38260 [Protein kinase superfamily protein] 0.496 0.050
57 261726_at AT1G76270 [O-fucosyltransferase family protein] 0.493 -0.000
58 245353_at AT4G16000 unknown 0.493 -0.479
59 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.491 0.358
60 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.491 -0.857
61 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 0.487 -0.755
62 267580_at AT2G41990 unknown 0.486 -1.007
63 259634_at AT1G56380 [Mitochondrial transcription termination factor family protein] 0.482 -0.971
64 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.481 0.220
65 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.481 0.308
66 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 0.479 0.461
67 259807_at AT1G47920 [RNI-like superfamily protein] 0.478 -0.029
68 249256_at AT5G41620 unknown 0.478 -0.152
69 250327_at AT5G12050 unknown 0.474 -0.852
70 245533_at AT4G15130 ATCCT2, CCT2, phosphorylcholine cytidylyltransferase2 0.470 -0.526
71 263739_at AT2G21320 BBX18, B-box domain protein 18 0.468 0.535
72 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.467 0.511
73 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.462 -0.381
74 253870_at AT4G27530 unknown 0.460 -0.763
75 257921_at AT3G23270 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.456 -0.306
76 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 0.456 0.622
77 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.454 -0.533
78 257680_at AT3G20330 PYRB, PYRIMIDINE B 0.453 0.420
79 262949_at AT1G75790 sks18, SKU5 similar 18 0.450 -0.358
80 266029_at AT2G05850 scpl38, serine carboxypeptidase-like 38 0.449 -0.159
81 259027_at AT3G09280 unknown 0.448 -0.644
82 253454_at AT4G31875 unknown 0.447 0.178
83 247326_at AT5G64110 [Peroxidase superfamily protein] 0.444 1.196
84 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.443 0.404
85 257494_at AT1G32375 [F-box/RNI-like/FBD-like domains-containing protein] 0.442 -0.376
86 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.441 -0.587
87 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.438 0.136
88 254972_at AT4G10440 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 -0.669
89 262565_at AT1G34320 unknown 0.432 -0.223
90 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.969 0.060
91 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.779 0.448
92 251734_at AT3G56270 unknown -0.714 -0.805
93 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.683 -0.203
94 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.660 -0.087
95 253996_at AT4G26110 ATNAP1;1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, NAP1;1, nucleosome assembly protein1;1 -0.652 0.843
96 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.646 -0.094
97 267211_at AT2G44065 [Ribosomal protein L2 family] -0.629 0.187
98 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 -0.628 0.564
99 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.622 -0.396
100 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.614 0.358
101 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 -0.613 -0.569
102 254418_at AT4G21480 STP12, sugar transporter protein 12 -0.603 -0.224
103 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.597 -0.666
104 255981_at AT1G34020 [Nucleotide-sugar transporter family protein] -0.594 0.227
105 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.587 0.854
106 252701_at AT3G43700 ATBPM6, BTB-POZ AND MATH DOMAIN 6, BPM6, BTB-POZ and MATH domain 6 -0.581 -0.177
107 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.569 -0.440
108 246797_at AT5G26790 unknown -0.569 0.552
109 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.567 0.116
110 264908_at AT2G17440 PIRL5, plant intracellular ras group-related LRR 5 -0.565 -0.150
111 257474_at AT1G80850 [DNA glycosylase superfamily protein] -0.564 0.045
112 265957_at AT2G37300 ABCI16, ATP-binding cassette I16 -0.562 0.687
113 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.544 0.044
114 257848_at AT3G13030 [hAT transposon superfamily protein] -0.525 -0.410
115 260700_at AT1G32260 unknown -0.523 0.393
116 262719_at AT1G43590 unknown -0.520 -0.119
117 266655_at AT2G25880 AtAUR2, ataurora2, AUR2, ataurora2 -0.519 0.564
118 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] -0.512 0.385
119 258782_at AT3G11750 FOLB1 -0.512 -0.859
120 249410_at AT5G40380 CRK42, cysteine-rich RLK (RECEPTOR-like protein kinase) 42 -0.505 -0.303
121 256281_at AT3G12560 ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2, TRFL9, TRF-like 9 -0.505 -0.431
122 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.504 0.178
123 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A -0.498 0.034
124 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.494 1.069
125 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.488 -0.871
126 249608_at AT5G37310 [Endomembrane protein 70 protein family] -0.479 0.478
127 257554_at AT3G24890 ATVAMP728, VAMP728, vesicle-associated membrane protein 728 -0.474 0.148
128 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] -0.470 -0.028
129 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 -0.469 -0.322
130 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.465 -0.160
131 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 -0.465 -0.333
132 264821_at AT1G03470 NET3A, Networked 3A -0.464 -0.172
133 257092_at AT3G20550 DDL, DAWDLE -0.457 0.208
134 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.452 0.140
135 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.452 -0.199
136 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 -0.447 1.087
137 246091_at AT5G20590 TBL5, TRICHOME BIREFRINGENCE-LIKE 5 -0.446 -0.188
138 263947_at AT2G35820 [ureidoglycolate hydrolases] -0.443 -0.962
139 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 -0.434 -0.729
140 250722_at AT5G06190 unknown -0.434 0.107
141 262948_at AT1G75560 [zinc knuckle (CCHC-type) family protein] -0.431 0.391
142 264300_at AT1G78670 ATGGH3, gamma-glutamyl hydrolase 3, GGH3, gamma-glutamyl hydrolase 3 -0.431 0.149
143 255839_at AT2G33500 BBX12, B-box domain protein 12 -0.429 -0.817
144 260715_at AT1G48200 unknown -0.420 -0.029
145 248249_at AT5G53140 [Protein phosphatase 2C family protein] -0.419 0.351
146 258608_at AT3G03020 unknown -0.417 -0.209
147 262415_at AT1G49400 emb1129, embryo defective 1129 -0.417 0.894
148 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.414 -0.092
149 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.411 -0.710
150 264831_at AT1G03687 [DTW domain-containing protein] -0.409 0.578
151 265339_at AT2G18230 AtPPa2, pyrophosphorylase 2, PPa2, pyrophosphorylase 2 -0.404 0.417
152 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.403 0.886
153 256858_at AT3G15140 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.401 0.467
154 266869_at AT2G44660 [ALG6, ALG8 glycosyltransferase family] -0.399 0.274
155 258988_at AT3G08890 unknown -0.394 -0.741
156 265964_at AT2G37510 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.391 0.348
157 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 -0.384 0.968
158 252155_at AT3G50920 LPPepsilon1, lipid phosphate phosphatase epsilon 1 -0.382 0.148
159 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.382 0.606
160 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.381 0.028
161 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 -0.381 -0.075
162 264179_at AT1G02180 [ferredoxin-related] -0.381 -0.308
163 251952_at AT3G53650 [Histone superfamily protein] -0.379 -0.277
164 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.378 0.330
165 262762_at AT1G10700 PRS3, phosphoribosyl pyrophosphate (PRPP) synthase 3 -0.377 1.065
166 251392_at AT3G60880 DHDPS, DIHYDRODIPICOLINATE SYNTHASE, DHDPS1, dihydrodipicolinate synthase 1 -0.369 0.334
167 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.365 0.179
168 247150_at AT5G65650 unknown -0.365 0.669
169 258336_at AT3G16050 A37, ATPDX1.2, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, PDX1.2, pyridoxine biosynthesis 1.2 -0.361 0.619
170 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.358 0.765
171 260332_at AT1G70470 unknown -0.357 -0.438
172 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.354 -0.621
173 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.354 -0.119
174 251224_at AT3G62620 [sucrose-phosphatase-related] -0.352 0.594
175 261485_at AT1G14360 ATUTR3, UTR3, UDP-galactose transporter 3 -0.352 0.836
176 264382_at AT2G25110 AtSDF2, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, ATSDL, ATSDF2-LIKE, SDF2, stromal cell-derived factor 2-like protein precursor -0.352 0.611
177 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.351 -0.179