4.0:Information of module
CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold
In comparison with Nuclei suspensor help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0097305 response to alcohol BP 1.818e-08
GO:0042221 response to chemical BP 3.655e-08
GO:0033993 response to lipid BP 7.510e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0016143 S-glycoside metabolic process BP 2.727e-08
GO:0019757 glycosinolate metabolic process BP 2.727e-08
GO:0019760 glucosinolate metabolic process BP 2.727e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CSP1 immonoprecipitated RNA 35S:HF-RPL18 cold		 Log2 signal ratio
Nuclei suspensor
1 250099_at AT5G17300 RVE1, REVEILLE 1 0.985 -0.384
2 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.947 -0.133
3 256602_at AT3G28310 unknown 0.899 0.130
4 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.871 0.215
5 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.837 -0.788
6 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.834 -0.422
7 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 0.793 0.685
8 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.790 0.066
9 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 0.742 0.325
10 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.703 0.037
11 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 0.701 -0.548
12 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.686 0.422
13 251753_at AT3G55760 unknown 0.672 0.587
14 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] 0.658 0.297
15 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.656 -0.144
16 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.646 -0.713
17 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.640 -0.662
18 257333_at ATMG01360 COX1, cytochrome oxidase 0.631 0.121
19 254797_at AT4G13030 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.627 -0.032
20 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.625 0.640
21 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] 0.610 0.272
22 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 0.604 -0.675
23 248649_at AT5G49240 APRR4, pseudo-response regulator 4, PRR4, PSEUDO-RESPONSE REGULATOR 4 0.594 -0.328
24 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 0.588 0.938
25 263789_at AT2G24560 [GDSL-like Lipase/Acylhydrolase family protein] 0.584 -0.139
26 259751_at AT1G71030 ATMYBL2, ARABIDOPSIS MYB-LIKE 2, MYBL2, MYB-like 2 0.577 1.599
27 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 0.575 -0.936
28 263309_at AT2G10370 unknown 0.574 -1.213
29 257093_at AT3G20570 AtENODL9, ENODL9, early nodulin-like protein 9 0.573 0.150
30 261971_at AT1G65990 [type 2 peroxiredoxin-related / thiol specific antioxidant / mal allergen family protein] 0.573 -0.160
31 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.572 -0.880
32 262103_at AT1G02940 ATGSTF5, GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5, GSTF5, glutathione S-transferase (class phi) 5 0.571 0.857
33 245558_at AT4G15430 [ERD (early-responsive to dehydration stress) family protein] 0.563 0.462
34 255654_at AT4G00970 CRK41, cysteine-rich RLK (RECEPTOR-like protein kinase) 41 0.557 -0.945
35 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC 0.547 0.386
36 259373_at AT1G69160 unknown 0.543 -0.523
37 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue 0.538 0.148
38 262339_at AT1G64000 ATWRKY56, WRKY56, WRKY DNA-binding protein 56 0.534 -0.661
39 267579_at AT2G42000 AtMT4a, Arabidopsis thaliana metallothionein 4a 0.533 -0.046
40 259834_at AT1G69570 [Dof-type zinc finger DNA-binding family protein] 0.531 1.188
41 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.531 1.260
42 260264_at AT1G68500 unknown 0.530 -0.509
43 251382_at AT3G60730 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.527 -1.273
44 254544_at AT4G19820 [Glycosyl hydrolase family protein with chitinase insertion domain] 0.525 -0.033
45 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.517 -0.417
46 247474_at AT5G62280 unknown 0.513 -0.685
47 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.512 -0.250
48 246886_at AT5G26240 ATCLC-D, CLC-D, chloride channel D 0.509 0.858
49 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.508 -0.256
50 249415_at AT5G39660 CDF2, cycling DOF factor 2 0.503 0.423
51 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.503 0.429
52 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 0.503 1.019
53 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.502 0.280
54 253425_at AT4G32190 [Myosin heavy chain-related protein] 0.502 -0.818
55 245076_at AT2G23170 GH3.3 0.498 0.834
56 249553_at AT5G38260 [Protein kinase superfamily protein] 0.496 0.084
57 261726_at AT1G76270 [O-fucosyltransferase family protein] 0.493 0.001
58 245353_at AT4G16000 unknown 0.493 -0.858
59 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.491 0.621
60 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 0.491 -1.013
61 250165_at AT5G15290 CASP5, Casparian strip membrane domain protein 5 0.487 -0.820
62 267580_at AT2G41990 unknown 0.486 -0.511
63 259634_at AT1G56380 [Mitochondrial transcription termination factor family protein] 0.482 -0.677
64 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.481 -0.076
65 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 0.481 0.600
66 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 0.479 0.185
67 259807_at AT1G47920 [RNI-like superfamily protein] 0.478 0.055
68 249256_at AT5G41620 unknown 0.478 -0.268
69 250327_at AT5G12050 unknown 0.474 -1.077
70 245533_at AT4G15130 ATCCT2, CCT2, phosphorylcholine cytidylyltransferase2 0.470 -0.414
71 263739_at AT2G21320 BBX18, B-box domain protein 18 0.468 1.302
72 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.467 0.978
73 261691_at AT1G50060 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.462 -0.751
74 253870_at AT4G27530 unknown 0.460 -0.656
75 257921_at AT3G23270 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.456 -0.213
76 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 0.456 1.240
77 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.454 0.015
78 257680_at AT3G20330 PYRB, PYRIMIDINE B 0.453 0.164
79 262949_at AT1G75790 sks18, SKU5 similar 18 0.450 -0.504
80 266029_at AT2G05850 scpl38, serine carboxypeptidase-like 38 0.449 0.159
81 259027_at AT3G09280 unknown 0.448 -0.773
82 253454_at AT4G31875 unknown 0.447 0.252
83 247326_at AT5G64110 [Peroxidase superfamily protein] 0.444 0.895
84 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.443 -0.024
85 257494_at AT1G32375 [F-box/RNI-like/FBD-like domains-containing protein] 0.442 0.004
86 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 0.441 -0.678
87 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.438 -0.241
88 254972_at AT4G10440 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 -0.489
89 262565_at AT1G34320 unknown 0.432 -0.320
90 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.969 0.044
91 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.779 0.440
92 251734_at AT3G56270 unknown -0.714 -0.200
93 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.683 -0.375
94 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.660 0.235
95 253996_at AT4G26110 ATNAP1;1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, NAP1;1, nucleosome assembly protein1;1 -0.652 -0.205
96 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.646 -0.410
97 267211_at AT2G44065 [Ribosomal protein L2 family] -0.629 -0.220
98 245035_at AT2G26400 ARD, ACIREDUCTONE DIOXYGENASE, ARD3, acireductone dioxygenase 3, ATARD3, acireductone dioxygenase 3 -0.628 0.461
99 253244_at AT4G34580 AtSFH1, COW1, CAN OF WORMS1, SRH1, SHORT ROOT HAIR 1 -0.622 -0.596
100 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.614 1.230
101 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 -0.613 -0.689
102 254418_at AT4G21480 STP12, sugar transporter protein 12 -0.603 0.680
103 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.597 -0.686
104 255981_at AT1G34020 [Nucleotide-sugar transporter family protein] -0.594 -0.007
105 265530_at AT2G06050 AtOPR3, DDE1, DELAYED DEHISCENCE 1, OPR3, oxophytodienoate-reductase 3 -0.587 0.672
106 252701_at AT3G43700 ATBPM6, BTB-POZ AND MATH DOMAIN 6, BPM6, BTB-POZ and MATH domain 6 -0.581 -0.094
107 254333_at AT4G22753 ATSMO1-3, SMO1-3, sterol 4-alpha methyl oxidase 1-3 -0.569 -0.190
108 246797_at AT5G26790 unknown -0.569 0.579
109 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.567 0.912
110 264908_at AT2G17440 PIRL5, plant intracellular ras group-related LRR 5 -0.565 -0.672
111 257474_at AT1G80850 [DNA glycosylase superfamily protein] -0.564 0.352
112 265957_at AT2G37300 ABCI16, ATP-binding cassette I16 -0.562 1.459
113 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.544 -0.231
114 257848_at AT3G13030 [hAT transposon superfamily protein] -0.525 -0.319
115 260700_at AT1G32260 unknown -0.523 0.363
116 262719_at AT1G43590 unknown -0.520 -0.189
117 266655_at AT2G25880 AtAUR2, ataurora2, AUR2, ataurora2 -0.519 0.413
118 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] -0.512 -0.024
119 258782_at AT3G11750 FOLB1 -0.512 -0.609
120 249410_at AT5G40380 CRK42, cysteine-rich RLK (RECEPTOR-like protein kinase) 42 -0.505 -0.421
121 256281_at AT3G12560 ATTBP2, TELOMERIC DNA-BINDING PROTEIN 2, TRFL9, TRF-like 9 -0.505 -0.580
122 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.504 -0.188
123 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A -0.498 0.007
124 253147_at AT4G35600 CST, CAST AWAY, CX32, CONNEXIN 32, Kin4, kinase 4 -0.494 0.564
125 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.488 -0.702
126 249608_at AT5G37310 [Endomembrane protein 70 protein family] -0.479 0.528
127 257554_at AT3G24890 ATVAMP728, VAMP728, vesicle-associated membrane protein 728 -0.474 0.130
128 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] -0.470 -0.165
129 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 -0.469 -0.081
130 248092_at AT5G55170 ATSUMO3, SUM3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO 3, SMALL UBIQUITIN-LIKE MODIFIER 3, SUMO3, small ubiquitin-like modifier 3 -0.465 -1.074
131 253270_at AT4G34160 CYCD3, CYCD3;1, CYCLIN D3;1 -0.465 -0.495
132 264821_at AT1G03470 NET3A, Networked 3A -0.464 -0.006
133 257092_at AT3G20550 DDL, DAWDLE -0.457 0.189
134 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.452 0.705
135 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.452 -0.163
136 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 -0.447 0.686
137 246091_at AT5G20590 TBL5, TRICHOME BIREFRINGENCE-LIKE 5 -0.446 -0.135
138 263947_at AT2G35820 [ureidoglycolate hydrolases] -0.443 -1.065
139 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 -0.434 -1.237
140 250722_at AT5G06190 unknown -0.434 0.075
141 262948_at AT1G75560 [zinc knuckle (CCHC-type) family protein] -0.431 0.043
142 264300_at AT1G78670 ATGGH3, gamma-glutamyl hydrolase 3, GGH3, gamma-glutamyl hydrolase 3 -0.431 -0.258
143 255839_at AT2G33500 BBX12, B-box domain protein 12 -0.429 -0.611
144 260715_at AT1G48200 unknown -0.420 -0.247
145 248249_at AT5G53140 [Protein phosphatase 2C family protein] -0.419 -0.055
146 258608_at AT3G03020 unknown -0.417 0.275
147 262415_at AT1G49400 emb1129, embryo defective 1129 -0.417 0.375
148 263690_at AT1G26960 AtHB23, homeobox protein 23, HB23, homeobox protein 23 -0.414 0.468
149 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.411 -0.780
150 264831_at AT1G03687 [DTW domain-containing protein] -0.409 0.654
151 265339_at AT2G18230 AtPPa2, pyrophosphorylase 2, PPa2, pyrophosphorylase 2 -0.404 0.479
152 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.403 0.418
153 256858_at AT3G15140 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.401 0.319
154 266869_at AT2G44660 [ALG6, ALG8 glycosyltransferase family] -0.399 0.346
155 258988_at AT3G08890 unknown -0.394 -0.734
156 265964_at AT2G37510 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.391 0.114
157 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 -0.384 0.814
158 252155_at AT3G50920 LPPepsilon1, lipid phosphate phosphatase epsilon 1 -0.382 0.371
159 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.382 0.138
160 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.381 0.283
161 261713_at AT1G32640 ATMYC2, JAI1, JASMONATE INSENSITIVE 1, JIN1, JASMONATE INSENSITIVE 1, MYC2, RD22BP1, ZBF1 -0.381 -0.475
162 264179_at AT1G02180 [ferredoxin-related] -0.381 -0.390
163 251952_at AT3G53650 [Histone superfamily protein] -0.379 -0.201
164 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.378 0.553
165 262762_at AT1G10700 PRS3, phosphoribosyl pyrophosphate (PRPP) synthase 3 -0.377 0.667
166 251392_at AT3G60880 DHDPS, DIHYDRODIPICOLINATE SYNTHASE, DHDPS1, dihydrodipicolinate synthase 1 -0.369 -0.119
167 264200_at AT1G22650 A/N-InvD, alkaline/neutral invertase D -0.365 0.151
168 247150_at AT5G65650 unknown -0.365 0.343
169 258336_at AT3G16050 A37, ATPDX1.2, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, PDX1.2, pyridoxine biosynthesis 1.2 -0.361 0.422
170 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.358 0.671
171 260332_at AT1G70470 unknown -0.357 -0.684
172 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.354 -0.507
173 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.354 0.375
174 251224_at AT3G62620 [sucrose-phosphatase-related] -0.352 0.484
175 261485_at AT1G14360 ATUTR3, UTR3, UDP-galactose transporter 3 -0.352 0.835
176 264382_at AT2G25110 AtSDF2, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, ATSDL, ATSDF2-LIKE, SDF2, stromal cell-derived factor 2-like protein precursor -0.352 0.261
177 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.351 -0.269