4.0:Information of module
CSP1 immonoprecipitated RNA 35S:AtCSP1-FH1 cold
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009266 response to temperature stimulus BP 2.529e-07
GO:0009409 response to cold BP 3.109e-06
GO:0033993 response to lipid BP 4.981e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 5.736e-03
GO:0006661 phosphatidylinositol biosynthetic proces... BP 6.682e-03
GO:0009250 glucan biosynthetic process BP 9.171e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CSP1 immonoprecipitated RNA 35S:AtCSP1-FH1 cold		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 1.153 -0.038
2 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 1.070 0.058
3 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] 1.051 -0.079
4 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.934 0.079
5 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.931 -0.045
6 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.925 0.032
7 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.812 0.041
8 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.793 0.042
9 267509_at AT2G45660 AGL20, AGAMOUS-like 20, ATSOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1, SOC1, SUPPRESSOR OF OVEREXPRESSION OF CO 1 0.756 0.025
10 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.678 -0.025
11 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.665 -0.023
12 263931_at AT2G36220 unknown 0.656 0.020
13 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.650 -0.006
14 260556_at AT2G43620 [Chitinase family protein] 0.620 0.013
15 254707_at AT4G18010 5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, AT5PTASE2, myo-inositol polyphosphate 5-phosphatase 2, IP5PII, INOSITOL(1,4,5)P3 5-PHOSPHATASE II 0.615 -0.036
16 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.575 0.063
17 256456_at AT1G75180 [Erythronate-4-phosphate dehydrogenase family protein] 0.567 -0.003
18 260137_at AT1G66330 [senescence-associated family protein] 0.567 -0.026
19 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.562 0.047
20 254996_at AT4G10390 [Protein kinase superfamily protein] 0.552 0.039
21 263739_at AT2G21320 BBX18, B-box domain protein 18 0.536 0.004
22 264211_at AT1G22770 FB, GI, GIGANTEA 0.534 -0.065
23 256569_at AT3G19550 unknown 0.523 0.079
24 263593_at AT2G01860 EMB975, EMBRYO DEFECTIVE 975 0.515 -0.029
25 254043_at AT4G25990 CIL 0.507 0.026
26 253125_at AT4G36040 DJC23, DNA J protein C23, J11, DnaJ11 0.493 -0.141
27 246632_at AT1G29710 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.486 0.025
28 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 0.480 -0.003
29 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.477 0.009
30 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.470 0.064
31 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.462 0.008
32 251658_at AT3G57020 [Calcium-dependent phosphotriesterase superfamily protein] 0.460 -0.021
33 264767_at AT1G61380 SD1-29, S-domain-1 29 0.455 -0.013
34 262136_at AT1G77850 ARF17, auxin response factor 17 0.448 0.042
35 260264_at AT1G68500 unknown 0.445 -0.026
36 247937_at AT5G57110 ACA8, autoinhibited Ca2+ -ATPase, isoform 8, AT-ACA8, AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8 0.444 -0.042
37 248160_at AT5G54470 BBX29, B-box domain protein 29 0.434 -0.005
38 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 -0.728 0.048
39 246599_at AT5G14900 [helicase associated (HA2) domain-containing protein] -0.612 -0.044
40 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.575 0.011
41 261684_at AT1G47400 unknown -0.574 -0.002
42 260259_at AT1G74300 [alpha/beta-Hydrolases superfamily protein] -0.566 0.039
43 255825_at AT2G40475 ASG8, ALTERED SEED GERMINATION 8 -0.561 0.046
44 245226_at AT3G29970 [B12D protein] -0.521 0.167
45 245130_at AT2G45340 [Leucine-rich repeat protein kinase family protein] -0.514 0.016
46 248154_at AT5G54400 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.494 0.014
47 248251_at AT5G53220 unknown -0.492 -0.007
48 264408_at AT1G10240 FRS11, FAR1-related sequence 11 -0.472 -0.027
49 255223_at AT4G05370 [BCS1 AAA-type ATPase] -0.470 0.044
50 255924_at AT1G22170 [Phosphoglycerate mutase family protein] -0.457 0.040
51 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.457 -0.032
52 260735_at AT1G17610 CHS1, CHILLING SENSITIVE 1 -0.457 -0.023
53 260762_at AT1G49015 [DPP6 N-terminal domain-like protein] -0.451 0.001
54 260819_at AT1G06850 AtbZIP52, basic leucine-zipper 52, bZIP52, basic leucine-zipper 52 -0.442 0.020
55 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.442 0.111
56 264215_at AT1G65340 CYP96A3, cytochrome P450, family 96, subfamily A, polypeptide 3 -0.440 0.012
57 257051_at AT3G15270 SPL5, squamosa promoter binding protein-like 5 -0.439 -0.053
58 250828_at AT5G05250 unknown -0.426 0.037
59 263099_at AT2G05200 [non-LTR retrotransposon family (LINE), has a 8.3e-42 P-value blast match to GB:NP_038605 L1 repeat, Tf subfamily, member 30 (LINE-element) (Mus musculus)] -0.417 0.038
60 259630_at AT1G56350 [Peptide chain release factor 2] -0.414 0.024
61 266869_at AT2G44660 [ALG6, ALG8 glycosyltransferase family] -0.410 -0.020
62 258956_at AT3G01440 PnsL3, Photosynthetic NDH subcomplex L 3, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 -0.408 0.083
63 252776_at AT3G42940 unknown -0.406 -0.022
64 254802_at AT4G13090 XTH2, xyloglucan endotransglucosylase/hydrolase 2 -0.398 -0.020
65 263440_at AT2G28640 ATEXO70H5, exocyst subunit exo70 family protein H5, EXO70H5, exocyst subunit exo70 family protein H5 -0.393 0.040
66 258379_at AT3G16700 [Fumarylacetoacetate (FAA) hydrolase family] -0.383 0.013
67 262255_at AT1G53790 [F-box and associated interaction domains-containing protein] -0.380 -0.029
68 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.376 -0.091
69 245208_at AT5G12330 LRP1, LATERAL ROOT PRIMORDIUM 1 -0.373 -0.002
70 262918_at AT1G65000 unknown -0.366 0.029
71 247511_at AT5G62040 BFT, brother of FT and TFL1 -0.361 0.052
72 255675_at AT4G00480 ATMYC1, myc1 -0.359 0.048
73 247602_at AT5G60900 RLK1, receptor-like protein kinase 1 -0.351 0.000