4.0:Information of module
rcf1-1 cold 24h
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 1.731e-12
GO:1901700 response to oxygen-containing compound BP 4.345e-11
GO:0001101 response to acid chemical BP 6.621e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0032535 regulation of cellular component size BP 2.681e-04
GO:0090066 regulation of anatomical structure size BP 2.681e-04
GO:0015698 inorganic anion transport BP 8.799e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
rcf1-1 cold 24h		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 263402_at AT2G04050 [MATE efflux family protein] 1.503 0.091
2 260522_x_at AT2G41730 unknown 1.146 0.225
3 253046_at AT4G37370 CYP81D8, cytochrome P450, family 81, subfamily D, polypeptide 8 1.141 0.285
4 266989_at AT2G39330 JAL23, jacalin-related lectin 23 1.118 -0.015
5 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 1.071 -0.128
6 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 1.065 0.409
7 252539_at AT3G45730 unknown 1.060 -0.125
8 249438_at AT5G40010 AATP1, AAA-ATPase 1, ASD, ATPase-in-Seed-Development 1.041 0.145
9 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 1.040 -0.030
10 265422_at AT2G20800 NDB4, NAD(P)H dehydrogenase B4 1.032 -0.009
11 253796_at AT4G28460 unknown 0.983 0.056
12 263061_at AT2G18190 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.971 0.126
13 265428_at AT2G20720 [Pentatricopeptide repeat (PPR) superfamily protein] 0.918 -0.029
14 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.832 0.235
15 264042_at AT2G03760 AtSOT1, AtSOT12, sulphotransferase 12, ATST1, ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, AtSULT202A1, RAR047, SOT12, sulphotransferase 12, ST, ST1, SULFOTRANSFERASE 1, SULT202A1, sulfotransferase 202A1 0.830 0.033
16 249377_at AT5G40690 unknown 0.713 -0.078
17 256762_at AT3G25655 IDL1, inflorescence deficient in abscission (IDA)-like 1 0.692 0.031
18 263210_at AT1G10585 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.679 0.135
19 251282_at AT3G61630 CRF6, cytokinin response factor 6 0.676 -0.018
20 248194_at AT5G54095 unknown 0.660 0.041
21 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.651 0.099
22 267627_at AT2G42270 [U5 small nuclear ribonucleoprotein helicase] 0.625 -0.365
23 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.587 0.065
24 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.586 0.137
25 260803_at AT1G78340 ATGSTU22, glutathione S-transferase TAU 22, GSTU22, glutathione S-transferase TAU 22 0.545 -0.097
26 254408_at AT4G21390 B120 0.540 0.026
27 256576_at AT3G28210 PMZ, SAP12, STRESS-ASSOCIATED PROTEIN 12 0.537 -0.015
28 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.525 0.078
29 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.521 -0.089
30 249987_at AT5G18490 unknown 0.508 -0.082
31 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] 0.500 -0.005
32 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.496 0.070
33 264001_at AT2G22420 [Peroxidase superfamily protein] -0.616 -0.070
34 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.584 -0.219
35 245657_at AT1G56720 [Protein kinase superfamily protein] -0.524 0.008
36 245420_at AT4G17410 [DWNN domain, a CCHC-type zinc finger] -0.478 0.151
37 245479_at AT4G16140 [proline-rich family protein] -0.436 -0.064
38 246525_at AT5G15840 BBX1, B-box domain protein 1, CO, CONSTANS, FG -0.431 0.000
39 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.426 0.080
40 247977_at AT5G56850 unknown -0.416 0.267
41 252989_at AT4G38420 sks9, SKU5 similar 9 -0.403 0.091
42 260975_at AT1G53430 [Leucine-rich repeat transmembrane protein kinase] -0.396 -0.043
43 256275_at AT3G12110 ACT11, actin-11 -0.395 -0.191
44 253032_at AT4G38200 [SEC7-like guanine nucleotide exchange family protein] -0.385 0.018
45 267549_at AT2G32640 [Lycopene beta/epsilon cyclase protein] -0.381 -0.000
46 245492_at AT4G16340 SPK1, SPIKE1 -0.380 -0.001
47 263202_at AT1G05630 5PTASE13, inositol-polyphosphate 5-phosphatase 13, AT5PTASE13, Arabidopsis thaliana inositol-polyphosphate 5-phosphatase 13 -0.372 0.094
48 262292_at AT1G27595 unknown -0.356 0.088
49 253158_at AT4G35780 STY17, serine/threonine/tyrosine kinase 17 -0.340 -0.017
50 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.340 -0.070
51 248788_at AT5G47430 [DWNN domain, a CCHC-type zinc finger] -0.329 -0.068
52 251593_at AT3G57660 NRPA1, nuclear RNA polymerase A1 -0.320 0.080
53 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.320 -0.188
54 251866_at AT3G54350 emb1967, embryo defective 1967 -0.318 -0.009
55 250460_at AT5G09850 [Transcription elongation factor (TFIIS) family protein] -0.316 0.116
56 246069_at AT5G20220 [zinc knuckle (CCHC-type) family protein] -0.311 -0.071
57 258114_at AT3G14660 CYP72A13, cytochrome P450, family 72, subfamily A, polypeptide 13 -0.310 -0.087
58 249095_at AT5G43900 ATMYA2, ARABIDOPSIS MYOSIN 2, MYA2, myosin 2, XI-2, MYOSIN X1 2, XI-6, MYOSIN XI-6 -0.305 0.024
59 246593_at AT5G14790 [ARM repeat superfamily protein] -0.298 0.020
60 265078_at AT1G55500 ECT4, evolutionarily conserved C-terminal region 4 -0.297 -0.020
61 260291_at AT1G63700 EMB71, EMBRYO DEFECTIVE 71, MAPKKK4, MAP KINASE KINASE KINASE 4, YDA, YODA -0.293 0.103
62 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.287 0.014
63 259155_at AT3G10330 AtTFIIB2, TFIIB2, transcription factor IIB 2 -0.282 -0.005