4.0:Information of module
WT cold 24h
In comparison with root cortex pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009628 response to abiotic stimulus BP 1.826e-20
GO:1901700 response to oxygen-containing compound BP 2.246e-14
GO:0010033 response to organic substance BP 6.799e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 1.426e-06
GO:0044711 single-organism biosynthetic process BP 2.229e-06
GO:0044283 small molecule biosynthetic process BP 8.627e-06
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT cold 24h		 Log2 signal ratio
root cortex pH4.6
1 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 1.376 0.034
2 263495_at AT2G42530 COR15B, cold regulated 15b 1.352 -0.024
3 249174_at AT5G42900 COR27, cold regulated gene 27 1.198 0.049
4 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 1.087 -0.275
5 267036_at AT2G38465 unknown 1.035 -0.043
6 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 1.028 0.039
7 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 1.017 0.004
8 262452_at AT1G11210 unknown 1.006 -0.088
9 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.994 -0.021
10 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 0.984 -0.009
11 265290_at AT2G22590 [UDP-Glycosyltransferase superfamily protein] 0.977 0.421
12 256114_at AT1G16850 unknown 0.955 -0.099
13 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.886 -0.068
14 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 0.861 -0.057
15 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.857 0.038
16 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.814 -0.071
17 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.814 -0.087
18 265093_at AT1G03905 ABCI19, ATP-binding cassette I19 0.801 0.023
19 260688_at AT1G17665 unknown 0.795 0.004
20 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.784 0.098
21 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.776 -0.024
22 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.751 -0.031
23 264019_at AT2G21130 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.737 -0.073
24 267364_at AT2G40080 ELF4, EARLY FLOWERING 4 0.713 0.043
25 264752_at AT1G23010 LPR1, Low Phosphate Root1 0.709 0.135
26 251432_at AT3G59820 AtLETM1, LETM1, leucine zipper-EF-hand-containing transmembrane protein 1 0.690 0.365
27 251753_at AT3G55760 unknown 0.685 -0.025
28 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.669 0.452
29 246525_at AT5G15840 BBX1, B-box domain protein 1, CO, CONSTANS, FG 0.667 0.007
30 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 0.650 -0.021
31 264045_at AT2G22450 AtRIBA2, RIBA2, homolog of ribA 2 0.624 0.040
32 247786_at AT5G58600 PMR5, POWDERY MILDEW RESISTANT 5, TBL44, TRICHOME BIREFRINGENCE-LIKE 44 0.617 -0.009
33 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.609 -0.088
34 253322_at AT4G33980 unknown 0.600 0.009
35 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.599 0.257
36 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 0.598 -0.144
37 261937_at AT1G22570 [Major facilitator superfamily protein] 0.588 -0.056
38 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.572 0.157
39 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.565 0.042
40 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.558 0.172
41 252468_at AT3G46970 ATPHS2, Arabidopsis thaliana alpha-glucan phosphorylase 2, PHS2, alpha-glucan phosphorylase 2 0.556 0.015
42 262881_at AT1G64890 [Major facilitator superfamily protein] 0.552 -0.096
43 249783_at AT5G24270 ATSOS3, SALT OVERLY SENSITIVE 3, CBL4, CALCINEURIN B-LIKE PROTEIN 4, SOS3, SALT OVERLY SENSITIVE 3 0.551 0.111
44 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.542 -0.070
45 252661_at AT3G44450 unknown 0.536 0.080
46 263919_at AT2G36470 unknown 0.520 -0.022
47 265061_at AT1G61640 [Protein kinase superfamily protein] 0.517 0.194
48 257271_at AT3G28007 AtSWEET4, SWEET4 0.516 -0.020
49 249091_at AT5G43860 ATCLH2, ARABIDOPSIS THALIANA CHLOROPHYLLASE 2, CLH2, chlorophyllase 2 0.513 0.134
50 265078_at AT1G55500 ECT4, evolutionarily conserved C-terminal region 4 0.496 0.060
51 247525_at AT5G61380 APRR1, AtTOC1, TIMING OF CAB EXPRESSION 1, PRR1, PSEUDO-RESPONSE REGULATOR 1, TOC1, TIMING OF CAB EXPRESSION 1 0.496 0.087
52 252988_at AT4G38410 [Dehydrin family protein] 0.487 0.047
53 246282_at AT4G36580 [AAA-type ATPase family protein] 0.483 0.593
54 252305_at AT3G49240 emb1796, embryo defective 1796 0.482 0.468
55 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 0.480 -0.059
56 251647_at AT3G57770 [Protein kinase superfamily protein] 0.480 -0.084
57 251611_at AT3G57940 unknown 0.477 0.252
58 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] 0.475 0.016
59 264787_at AT2G17840 ERD7, EARLY-RESPONSIVE TO DEHYDRATION 7 0.469 -0.065
60 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.468 0.081
61 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.465 -0.039
62 251631_at AT3G57430 OTP84, ORGANELLE TRANSCRIPT PROCESSING 84 0.457 0.057
63 248410_at AT5G51570 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.455 0.086
64 253981_at AT4G26670 [Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein] 0.455 -0.106
65 262910_at AT1G59710 unknown 0.454 0.019
66 255807_at AT4G10270 [Wound-responsive family protein] -1.090 -0.059
67 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -1.035 0.031
68 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.881 0.296
69 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.838 -0.029
70 261567_at AT1G33055 unknown -0.815 -0.066
71 247055_at AT5G66740 unknown -0.777 -0.059
72 247754_at AT5G59080 unknown -0.767 -0.022
73 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.748 0.072
74 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.732 0.076
75 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] -0.716 -0.167
76 250464_at AT5G10040 unknown -0.698 -0.053
77 257801_at AT3G18750 ATWNK6, ARABIDOPSIS THALIANA WITH NO K 6, WNK6, with no lysine (K) kinase 6, ZIK5 -0.694 0.016
78 267538_at AT2G41870 [Remorin family protein] -0.671 -0.072
79 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.667 0.175
80 258275_at AT3G15760 unknown -0.664 -0.094
81 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.664 -0.061
82 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 -0.661 0.188
83 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.657 0.138
84 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] -0.649 0.010
85 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.640 0.148
86 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.614 -0.034
87 262354_at AT1G64200 VHA-E3, vacuolar H+-ATPase subunit E isoform 3 -0.598 -0.119
88 246783_at AT5G27360 SFP2 -0.594 -0.021
89 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.584 0.105
90 254280_at AT4G22756 ATSMO1-2, SMO1-2, sterol C4-methyl oxidase 1-2 -0.583 -0.129
91 265511_at AT2G05540 [Glycine-rich protein family] -0.574 -0.080
92 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.565 -0.084
93 261597_at AT1G49780 PUB26, plant U-box 26 -0.553 -0.098
94 263118_at AT1G03090 MCCA -0.526 0.020
95 255760_at AT1G16780 AtVHP2;2, VHP2;2 -0.514 -0.064
96 252011_at AT3G52720 ACA1, alpha carbonic anhydrase 1, ATACA1, A. THALIANA ALPHA CARBONIC ANHYDRASE 1, CAH1, CARBONIC ANHYDRASE 1 -0.505 -0.007
97 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.504 -0.027
98 260983_at AT1G53560 [Ribosomal protein L18ae family] -0.501 -0.078
99 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 -0.499 0.041
100 265586_at AT2G19990 PR-1-LIKE, pathogenesis-related protein-1-like -0.493 0.033
101 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.491 -0.067
102 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.474 0.097
103 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] -0.467 -0.228
104 264240_at AT1G54820 [Protein kinase superfamily protein] -0.462 -0.121
105 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 -0.458 -0.020
106 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.445 -0.208
107 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.437 -0.046
108 249867_at AT5G23020 IMS2, 2-isopropylmalate synthase 2, MAM-L, METHYLTHIOALKYMALATE SYNTHASE-LIKE, MAM3 -0.421 -0.041
109 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.420 0.086
110 253317_at AT4G33960 unknown -0.418 -0.223
111 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.414 -0.294
112 263647_at AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein -0.412 0.027
113 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 -0.412 -0.047
114 262913_at AT1G59960 [NAD(P)-linked oxidoreductase superfamily protein] -0.412 -0.011
115 249122_at AT5G43850 ARD4, ATARD4 -0.410 -0.044
116 252040_at AT3G52060 AtGnTL, GnTL, beta-1,6-N-acetylglucosaminyl transferase-like -0.405 -0.067
117 255511_at AT4G02075 PIT1, pitchoun 1 -0.396 -0.274
118 257789_at AT3G27020 AtYSL6, YSL6, YELLOW STRIPE like 6 -0.396 -0.064
119 250598_at AT5G07690 ATMYB29, myb domain protein 29, MYB29, myb domain protein 29, PMG2, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 2 -0.395 -0.125
120 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 -0.394 -0.035
121 245984_at AT5G13090 unknown -0.391 -0.087
122 247352_at AT5G63650 SNRK2-5, SNRK2.5, SNF1-related protein kinase 2.5, SRK2H, SNF1-RELATED PROTEIN KINASE 2H -0.388 -0.017
123 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.384 -0.155
124 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.382 -0.136
125 246759_at AT5G27950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.379 -0.060
126 246487_at AT5G16030 unknown -0.376 -0.079
127 259476_at AT1G19000 [Homeodomain-like superfamily protein] -0.371 -0.086
128 262198_at AT1G53830 ATPME2, pectin methylesterase 2, PME2, pectin methylesterase 2 -0.369 -0.003
129 257880_at AT3G16910 AAE7, acyl-activating enzyme 7, ACN1, ACETATE NON-UTILIZING 1 -0.368 -0.003