4.0:Information of module
Transgenic LEC2GR Seedling 4h Dex
In comparison with phyABCDE Dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 1.456e-07
GO:0050896 response to stimulus BP 2.948e-07
GO:0065008 regulation of biological quality BP 4.918e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044550 secondary metabolite biosynthetic proces... BP 6.585e-10
GO:0001101 response to acid chemical BP 1.805e-09
GO:0050896 response to stimulus BP 5.586e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Transgenic LEC2GR Seedling 4h Dex		 Log2 signal ratio
phyABCDE Dark
1 245669_at AT1G28300 LEC2, LEAFY COTYLEDON 2 1.534 -0.086
2 253904_at AT4G27140 AT2S1, SESA1, seed storage albumin 1 1.407 0.540
3 251838_at AT3G54940 [Papain family cysteine protease] 1.386 0.992
4 248125_at AT5G54740 SESA5, seed storage albumin 5 1.372 1.540
5 253902_at AT4G27170 AT2S4, SESA4, seed storage albumin 4 1.339 0.972
6 253895_at AT4G27160 AT2S3, SESA3, seed storage albumin 3 1.319 1.287
7 250610_at AT5G07550 ATGRP19, GRP19, glycine-rich protein 19 1.304 -0.072
8 267431_at AT2G34870 MEE26, maternal effect embryo arrest 26 1.195 0.078
9 254574_at AT4G19430 unknown 1.147 0.015
10 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 1.122 1.502
11 267317_at AT2G34700 [Pollen Ole e 1 allergen and extensin family protein] 1.115 0.210
12 248435_at AT5G51210 OLEO3, oleosin3 1.083 0.007
13 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 0.995 1.440
14 247264_at AT5G64530 ANAC104, Arabidopsis NAC domain containing protein 104, XND1, xylem NAC domain 1 0.978 -0.026
15 254956_at AT4G10850 AtSWEET7, SWEET7 0.968 -0.011
16 264341_at AT1G70270 unknown 0.914 0.012
17 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.862 0.793
18 246149_at AT5G19890 [Peroxidase superfamily protein] 0.842 -0.110
19 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.838 0.054
20 255471_at AT4G03050 AOP3 0.837 -0.051
21 266392_at AT2G41280 ATM10, M10 0.825 0.953
22 249770_at AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 0.794 0.032
23 264606_at AT1G04660 [glycine-rich protein] 0.780 0.168
24 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.768 0.022
25 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.752 -0.020
26 247882_at AT5G57785 unknown 0.745 -0.036
27 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 0.744 0.078
28 266321_at AT2G46660 CYP78A6, cytochrome P450, family 78, subfamily A, polypeptide 6, EOD3, enhancer of da1-1 0.736 0.049
29 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.736 0.637
30 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.735 0.165
31 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.724 0.049
32 250519_at AT5G08460 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.716 0.093
33 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.711 0.771
34 254200_at AT4G24110 unknown 0.709 0.552
35 267519_at AT2G30470 HSI2, high-level expression of sugar-inducible gene 2, VAL1, VP1/ABI3-LIKE 1 0.683 0.002
36 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.678 -0.008
37 261662_at AT1G18350 ATMKK7, MAP kinase kinase 7, BUD1, BUSHY AND DWARF 1, MKK7, MAP kinase kinase 7, MKK7, MAP KINASE KINASE7 0.675 -0.026
38 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein 0.668 0.520
39 262478_at AT1G11170 unknown 0.645 0.080
40 261367_at AT1G53080 [Legume lectin family protein] 0.644 -0.064
41 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.644 -0.029
42 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.641 -0.176
43 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.639 1.060
44 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.639 -0.028
45 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 0.634 -0.111
46 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.632 0.003
47 265261_at AT2G42990 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.627 0.051
48 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 0.624 0.194
49 254336_at AT4G22050 [Eukaryotic aspartyl protease family protein] 0.613 0.009
50 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.601 -0.175
51 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.592 -0.171
52 256814_at AT3G21370 BGLU19, beta glucosidase 19 0.577 1.075
53 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] 0.577 -0.076
54 253406_at AT4G32890 GATA9, GATA transcription factor 9 0.576 -0.037
55 267597_at AT2G33020 AtRLP24, receptor like protein 24, RLP24, receptor like protein 24 0.569 0.022
56 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.545 0.018
57 266860_at AT2G26870 NPC2, non-specific phospholipase C2 0.542 0.031
58 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.539 0.071
59 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.532 0.006
60 246495_at AT5G16200 [50S ribosomal protein-related] 0.524 0.076
61 256743_at AT3G29370 P1R3, P1R3 0.523 0.046
62 264721_at AT1G23000 [Heavy metal transport/detoxification superfamily protein ] 0.518 -0.161
63 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 0.516 0.058
64 249772_at AT5G24130 unknown 0.515 0.393
65 253880_at AT4G27590 [Heavy metal transport/detoxification superfamily protein ] 0.509 -0.084
66 255422_at AT4G03270 CYCD6;1, Cyclin D6;1 0.508 0.065
67 263433_at AT2G22240 ATIPS2, INOSITOL 3-PHOSPHATE SYNTHASE 2, ATMIPS2, MYO-INOSITOL-1-PHOSTPATE SYNTHASE 2, MIPS2, myo-inositol-1-phosphate synthase 2 0.503 -0.037
68 248911_at AT5G45830 ATDOG1, DOG1, DELAY OF GERMINATION 1, GAAS5, germination ability after storage 5, GSQ5, GLUCOSE SENSING QTL 5 0.502 0.076
69 248772_at AT5G47800 [Phototropic-responsive NPH3 family protein] 0.489 -0.037
70 262080_at AT1G59650 CW14 0.470 -0.047
71 249303_at AT5G41460 unknown 0.469 -0.022
72 248889_at AT5G46230 unknown 0.458 0.097
73 244935_at ATCG01090 NDHI 0.457 -0.001
74 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.597 -0.155
75 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.584 -0.013
76 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 -0.527 -0.106
77 258091_at AT3G14560 unknown -0.522 -0.090
78 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.505 0.020
79 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.498 -0.017
80 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.497 -0.024
81 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.477 0.025
82 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.439 -0.109
83 249807_at AT5G23870 [Pectinacetylesterase family protein] -0.435 -0.250
84 253814_at AT4G28290 unknown -0.421 0.042
85 262826_at AT1G13080 CYP71B2, cytochrome P450, family 71, subfamily B, polypeptide 2 -0.410 -0.107
86 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.408 -0.099
87 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] -0.397 -0.067
88 263951_at AT2G35960 NHL12, NDR1/HIN1-like 12 -0.387 -0.048
89 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.384 -0.189
90 258957_at AT3G01420 ALPHA-DOX1, alpha-dioxygenase 1, DIOX1, DOX1, PADOX-1, plant alpha dioxygenase 1 -0.378 -0.038
91 266418_at AT2G38750 ANNAT4, annexin 4, AtANN4 -0.371 -0.120
92 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -0.367 -0.063
93 261819_at AT1G11410 [S-locus lectin protein kinase family protein] -0.360 -0.191
94 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.353 -0.088
95 248723_at AT5G47950 [HXXXD-type acyl-transferase family protein] -0.352 -0.146
96 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.345 -0.109
97 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 -0.344 -0.150
98 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 -0.344 0.084
99 257697_at AT3G12700 NANA, NANA -0.335 -0.098
100 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.330 -0.013
101 252199_at AT3G50270 [HXXXD-type acyl-transferase family protein] -0.326 -0.127
102 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 -0.325 -0.107
103 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.318 -0.061
104 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.314 -0.175
105 259466_at AT1G19050 ARR7, response regulator 7 -0.305 -0.070
106 267372_at AT2G26290 ARSK1, root-specific kinase 1 -0.301 -0.160
107 256275_at AT3G12110 ACT11, actin-11 -0.301 -0.244
108 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.299 -0.024
109 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.292 -0.103
110 262598_at AT1G15260 unknown -0.291 -0.126
111 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.290 -0.290
112 260655_at AT1G19320 [Pathogenesis-related thaumatin superfamily protein] -0.290 -0.023
113 251142_at AT5G01015 unknown -0.281 0.096
114 253638_at AT4G30470 [NAD(P)-binding Rossmann-fold superfamily protein] -0.278 0.041
115 249750_at AT5G24570 unknown -0.277 -0.012
116 265414_at AT2G16660 [Major facilitator superfamily protein] -0.271 0.057
117 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] -0.269 0.069
118 267178_at AT2G37750 unknown -0.264 -0.053
119 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.256 -0.131
120 249284_at AT5G41810 unknown -0.253 -0.069
121 254356_at AT4G22190 unknown -0.253 -0.030
122 245133_at AT2G45310 GAE4, UDP-D-glucuronate 4-epimerase 4 -0.250 -0.037
123 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.250 0.001
124 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 -0.246 0.071
125 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.243 -0.060
126 257113_at AT3G20130 CYP705A22, cytochrome P450, family 705, subfamily A, polypeptide 22, GPS1, gravity persistence signal 1 -0.240 -0.060
127 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.239 -0.047
128 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.237 0.272
129 257673_at AT3G20370 [TRAF-like family protein] -0.236 -0.000
130 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.235 0.053
131 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 -0.234 0.079
132 262236_at AT1G48330 unknown -0.233 -0.039
133 264102_at AT1G79270 ECT8, evolutionarily conserved C-terminal region 8 -0.227 -0.021
134 260876_at AT1G21460 AtSWEET1, SWEET1 -0.225 -0.078
135 249986_at AT5G18460 unknown -0.223 0.025
136 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 -0.219 -0.039
137 247440_at AT5G62680 AtNPF2.11, GTR2, GLUCOSINOLATE TRANSPORTER-2, NPF2.11, NRT1/ PTR family 2.11 -0.219 -0.050
138 259560_at AT1G21270 WAK2, wall-associated kinase 2 -0.218 0.061
139 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.217 0.031
140 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 -0.214 -0.053
141 248263_at AT5G53370 ATPMEPCRF, PECTIN METHYLESTERASE PCR FRAGMENT F, PMEPCRF, pectin methylesterase PCR fragment F -0.213 -0.122
142 246021_at AT5G21100 [Plant L-ascorbate oxidase] -0.213 0.001
143 245987_at AT5G13180 ANAC083, NAC domain containing protein 83, NAC083, NAC domain containing protein 83, VNI2, VND-interacting 2 -0.210 -0.088
144 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.210 -0.097
145 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.209 -0.113