4.0:Information of module
Transgenic LEC2GR Seedling 1h Dex
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.905e-27
GO:0010243 response to organonitrogen compound BP 3.516e-23
GO:0010200 response to chitin BP 7.017e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0034284 response to monosaccharide BP 1.272e-09
GO:0009750 response to fructose BP 9.818e-09
GO:0009746 response to hexose BP 1.457e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Transgenic LEC2GR Seedling 1h Dex		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 1.458 1.750
2 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 1.098 0.061
3 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.957 0.332
4 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.910 -0.596
5 254574_at AT4G19430 unknown 0.822 -1.241
6 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] 0.791 0.504
7 258349_at AT3G17609 HYH, HY5-homolog 0.748 0.004
8 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.742 -0.520
9 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.736 0.927
10 245041_at AT2G26530 AR781 0.733 0.026
11 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.726 0.378
12 246597_at AT5G14760 AO, L-aspartate oxidase, FIN4, FLAGELLIN-INSENSITIVE 4 0.716 0.714
13 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.712 -0.099
14 259325_at AT3G05320 [O-fucosyltransferase family protein] 0.709 0.121
15 245567_at AT4G14630 GLP9, germin-like protein 9 0.709 -0.722
16 262801_at AT1G21010 unknown 0.701 0.154
17 250258_at AT5G13790 AGL15, AGAMOUS-like 15 0.697 -0.686
18 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.642 -0.002
19 261662_at AT1G18350 ATMKK7, MAP kinase kinase 7, BUD1, BUSHY AND DWARF 1, MKK7, MAP kinase kinase 7, MKK7, MAP KINASE KINASE7 0.632 -0.063
20 247933_at AT5G56980 unknown 0.630 0.147
21 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.621 -0.538
22 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.619 -0.148
23 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.599 -0.052
24 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 0.597 0.206
25 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.591 -0.987
26 266321_at AT2G46660 CYP78A6, cytochrome P450, family 78, subfamily A, polypeptide 6, EOD3, enhancer of da1-1 0.584 0.193
27 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 0.579 0.707
28 258606_at AT3G02840 [ARM repeat superfamily protein] 0.579 -0.781
29 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.578 -0.162
30 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.577 0.530
31 253830_at AT4G27652 unknown 0.569 0.508
32 253880_at AT4G27590 [Heavy metal transport/detoxification superfamily protein ] 0.566 -0.619
33 264787_at AT2G17840 ERD7, EARLY-RESPONSIVE TO DEHYDRATION 7 0.566 0.103
34 248889_at AT5G46230 unknown 0.562 0.661
35 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.560 -0.180
36 251509_at AT3G59010 PME35, pectin methylesterase 35, PME61, pectin methylesterase 61 0.549 -0.459
37 252661_at AT3G44450 unknown 0.540 1.058
38 264000_at AT2G22500 ATPUMP5, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, DIC1, DICARBOXYLATE CARRIER 1, UCP5, uncoupling protein 5 0.538 -0.104
39 263221_at AT1G30620 HSR8, HIGH SUGAR RESPONSE8, MUR4, MURUS 4, UXE1, UDP-D-XYLOSE 4-EPIMERASE 1 0.537 0.218
40 248286_at AT5G52870 MAKR5, MEMBRANE-ASSOCIATED KINASE REGULATOR 5 0.537 -0.716
41 265732_at AT2G01300 unknown 0.531 -0.594
42 247582_at AT5G60760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.517 -0.342
43 260528_at AT2G47260 ATWRKY23, WRKY DNA-BINDING PROTEIN 23, WRKY23, WRKY DNA-binding protein 23 0.507 0.295
44 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.498 1.129
45 264091_at AT1G79110 BRG2, BOI-related gene 2 0.497 0.442
46 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.493 -0.604
47 254562_at AT4G19230 CYP707A1, cytochrome P450, family 707, subfamily A, polypeptide 1 0.492 0.221
48 247177_at AT5G65300 unknown 0.491 -0.026
49 250098_at AT5G17350 unknown 0.489 -0.307
50 246495_at AT5G16200 [50S ribosomal protein-related] 0.489 -0.418
51 261070_at AT1G07390 AtRLP1, receptor like protein 1, RLP1, receptor like protein 1 0.484 -0.135
52 261247_at AT1G20070 unknown 0.482 -0.094
53 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.479 -0.894
54 250968_at AT5G02890 [HXXXD-type acyl-transferase family protein] 0.477 -0.410
55 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.477 1.026
56 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 0.468 0.144
57 258270_at AT3G15650 [alpha/beta-Hydrolases superfamily protein] 0.464 -0.311
58 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 0.457 0.149
59 266536_at AT2G16900 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.456 0.267
60 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.456 -0.206
61 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.454 -0.705
62 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 0.451 0.207
63 257480_at AT1G15640 unknown 0.450 -0.699
64 262887_at AT1G14780 [MAC/Perforin domain-containing protein] 0.440 -0.019
65 251336_at AT3G61190 BAP1, BON association protein 1 0.440 -0.441
66 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.427 0.331
67 248277_at AT5G52860 ABCG8, ATP-binding cassette G8 0.424 -0.714
68 245740_at AT1G44100 AAP5, amino acid permease 5 0.422 0.576
69 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] 0.421 -0.753
70 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B 0.416 -0.489
71 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.412 -0.399
72 245677_at AT1G56660 unknown 0.410 0.205
73 260387_at AT1G74100 ATSOT16, SULFOTRANSFERASE 16, ATST5A, ARABIDOPSIS SULFOTRANSFERASE 5A, CORI-7, CORONATINE INDUCED-7, SOT16, sulfotransferase 16 0.407 0.905
74 266882_at AT2G44670 unknown 0.398 0.359
75 260023_at AT1G30040 ATGA2OX2, gibberellin 2-oxidase, GA2OX2, gibberellin 2-oxidase, GA2OX2, GIBBERELLIN 2-OXIDASE 2 0.397 0.251
76 264535_at AT1G55690 [Sec14p-like phosphatidylinositol transfer family protein] 0.395 0.085
77 253835_at AT4G27820 BGLU9, beta glucosidase 9 0.395 -0.256
78 255595_at AT4G01700 [Chitinase family protein] 0.393 1.744
79 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.392 -0.714
80 251653_at AT3G57130 BOP1, BLADE ON PETIOLE 1 0.392 0.325
81 261567_at AT1G33055 unknown -0.902 0.578
82 264788_at AT2G17880 DJC24, DNA J protein C24 -0.892 -0.541
83 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.732 0.535
84 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] -0.703 0.284
85 259996_at AT1G67910 unknown -0.633 0.185
86 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 -0.604 0.637
87 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 -0.584 -0.159
88 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.558 0.506
89 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 -0.555 -0.346
90 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.547 -0.238
91 259854_at AT1G72200 [RING/U-box superfamily protein] -0.545 -0.208
92 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.539 0.492
93 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.528 -0.283
94 256332_at AT1G76890 AT-GT2, GT2 -0.512 -0.612
95 266016_at AT2G18670 [RING/U-box superfamily protein] -0.511 0.962
96 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.506 -0.426
97 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.497 0.708
98 259235_at AT3G11600 unknown -0.492 0.023
99 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.481 -0.050
100 266259_at AT2G27830 unknown -0.471 0.333
101 261395_at AT1G79700 WRI4, WRINKLED 4 -0.469 -0.971
102 253246_at AT4G34600 unknown -0.469 0.585
103 266635_at AT2G35470 unknown -0.468 -0.076
104 255617_at AT4G01330 [Protein kinase superfamily protein] -0.460 0.733
105 264240_at AT1G54820 [Protein kinase superfamily protein] -0.460 -0.580
106 257946_at AT3G21710 unknown -0.459 0.448
107 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A -0.457 -1.242
108 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.455 -0.145
109 254193_at AT4G23870 unknown -0.453 -0.828
110 248969_at AT5G45310 unknown -0.452 -0.697
111 263265_at AT2G38820 unknown -0.452 -0.640
112 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.451 0.498
113 254919_at AT4G11360 RHA1B, RING-H2 finger A1B -0.449 -0.187
114 250008_at AT5G18630 [alpha/beta-Hydrolases superfamily protein] -0.448 -0.113
115 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.440 -0.202
116 250189_at AT5G14410 unknown -0.435 -0.371
117 267477_at AT2G02710 PLP, PAS/LOV PROTEIN, PLPA, PAS/LOV PROTEIN A, PLPB, PAS/LOV protein B, PLPC, PAS/LOV PROTEIN C -0.421 0.507
118 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 -0.419 -0.707
119 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.415 -0.555
120 246028_at AT5G21170 5'-AMP-activated protein kinase beta-2 subunit protein -0.410 0.723
121 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.404 0.602
122 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.402 0.084
123 259541_at AT1G20650 ASG5, ALTERED SEED GERMINATION 5 -0.397 -0.087
124 263333_at AT2G03890 ATPI4K GAMMA 7, phosphoinositide 4-kinase gamma 7, PI4K GAMMA 7, phosphoinositide 4-kinase gamma 7, UBDK GAMMA 7, UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7 -0.395 0.292
125 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.393 -0.734
126 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.389 -1.202
127 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] -0.388 0.670
128 265102_at AT1G30870 [Peroxidase superfamily protein] -0.387 -0.383
129 246244_at AT4G37250 [Leucine-rich repeat protein kinase family protein] -0.384 -0.679
130 248795_at AT5G47390 MYBH, MYB hypocotyl elongation-related -0.382 -0.681
131 259017_at AT3G07310 unknown -0.377 0.420
132 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.375 -0.215
133 245984_at AT5G13090 unknown -0.375 0.331
134 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.374 0.425
135 250012_x_at AT5G18060 SAUR23, SMALL AUXIN UP RNA 23 -0.373 0.078
136 246917_at AT5G25280 [serine-rich protein-related] -0.369 0.337
137 264040_at AT2G03730 ACR5, ACT domain repeat 5 -0.366 0.915
138 245602_at AT4G14270 unknown -0.364 0.401
139 262286_at AT1G68585 unknown -0.361 0.329
140 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 -0.357 0.223
141 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.352 -0.423
142 258225_at AT3G15630 unknown -0.352 0.342
143 246975_at AT5G24890 unknown -0.351 0.012
144 253278_at AT4G34220 [Leucine-rich repeat protein kinase family protein] -0.350 0.298
145 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 -0.346 -0.045
146 263118_at AT1G03090 MCCA -0.345 -0.507
147 265457_at AT2G46550 unknown -0.344 0.443
148 255851_at AT1G67040 TRM22, TON1 Recruiting Motif 22 -0.336 -0.471
149 257990_at AT3G19860 bHLH121, basic Helix-Loop-Helix 121 -0.334 0.915
150 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.331 -0.203
151 247170_at AT5G65530 [Protein kinase superfamily protein] -0.328 0.415
152 263827_at AT2G40420 [Transmembrane amino acid transporter family protein] -0.327 0.081
153 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 -0.326 -0.984
154 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.323 -0.629
155 266156_at AT2G28110 FRA8, FRAGILE FIBER 8, IRX7, IRREGULAR XYLEM 7 -0.323 -0.636
156 258350_at AT3G17510 CIPK1, CBL-interacting protein kinase 1, SnRK3.16, SNF1-RELATED PROTEIN KINASE 3.16 -0.322 -0.062
157 263799_at AT2G24550 unknown -0.322 0.949
158 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 -0.317 0.229
159 248759_at AT5G47610 [RING/U-box superfamily protein] -0.314 -0.174