4.0:Information of module
shoots WT 0uM Fe
In comparison with Stem tissue 5 days NAA help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.585e-09
GO:0006811 ion transport BP 4.812e-08
GO:0006820 anion transport BP 7.994e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 1.739e-09
GO:0019752 carboxylic acid metabolic process BP 1.740e-09
GO:0006082 organic acid metabolic process BP 1.846e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoots WT 0uM Fe		 Log2 signal ratio
Stem tissue 5 days NAA
1 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 1.012 0.163
2 263402_at AT2G04050 [MATE efflux family protein] 0.858 -0.046
3 257645_at AT3G25790 [myb-like transcription factor family protein] 0.649 0.039
4 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.637 0.066
5 257421_at AT1G12030 unknown 0.572 -0.025
6 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.547 0.004
7 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.530 0.402
8 249459_at AT5G39580 [Peroxidase superfamily protein] 0.478 0.013
9 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.473 0.225
10 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.451 0.411
11 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.441 0.016
12 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.435 0.052
13 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.434 -0.208
14 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.426 0.640
15 258349_at AT3G17609 HYH, HY5-homolog 0.416 0.092
16 264680_at AT1G65510 unknown 0.409 0.135
17 263515_at AT2G21640 unknown 0.407 -0.024
18 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.406 -0.361
19 256132_at AT1G13610 [alpha/beta-Hydrolases superfamily protein] 0.399 0.177
20 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.394 0.060
21 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.387 -0.140
22 264809_at AT1G08830 CSD1, copper/zinc superoxide dismutase 1 0.370 0.100
23 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.354 0.027
24 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.352 -0.238
25 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.348 -0.170
26 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 0.341 -0.043
27 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.340 0.032
28 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.333 -0.086
29 262373_at AT1G73120 unknown 0.328 0.143
30 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.317 0.472
31 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.305 0.086
32 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.297 -0.117
33 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.296 0.076
34 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.296 -0.120
35 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.293 0.549
36 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.291 0.067
37 252511_at AT3G46280 [protein kinase-related] 0.288 0.230
38 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.284 -0.069
39 267472_at AT2G02850 ARPN, plantacyanin 0.281 0.117
40 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] 0.280 0.015
41 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.274 0.114
42 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.273 0.835
43 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.266 0.069
44 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.261 -0.127
45 256544_at AT1G42560 ATMLO9, ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, MLO9, MILDEW RESISTANCE LOCUS O 9 0.258 -0.180
46 248392_at AT5G52050 [MATE efflux family protein] 0.255 -0.041
47 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.255 -0.103
48 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.254 0.179
49 258209_at AT3G14060 unknown 0.254 0.000
50 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.251 -0.035
51 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.250 -0.236
52 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.250 0.219
53 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 0.239 0.081
54 265600_at AT2G14230 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.237 -0.045
55 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 0.232 -0.058
56 264821_at AT1G03470 NET3A, Networked 3A 0.228 0.012
57 245296_at AT4G16370 oligopeptide transporter 0.227 -0.025
58 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.223 0.269
59 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.221 0.180
60 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.221 0.730
61 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.219 -0.208
62 264756_at AT1G61370 [S-locus lectin protein kinase family protein] 0.213 -0.040
63 263133_at AT1G78450 [SOUL heme-binding family protein] 0.212 -0.323
64 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.212 -0.017
65 249174_at AT5G42900 COR27, cold regulated gene 27 0.212 0.171
66 245507_at AT4G15710 unknown 0.201 -0.122
67 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.201 0.035
68 254817_at AT4G12460 ORP2B, OSBP(oxysterol binding protein)-related protein 2B 0.193 -0.005
69 257062_at AT3G18290 BTS, BRUTUS, EMB2454, embryo defective 2454 0.188 0.172
70 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.187 0.207
71 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.185 -0.106
72 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.181 -0.045
73 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.181 -0.228
74 251811_at AT3G54990 SMZ, SCHLAFMUTZE 0.180 -0.044
75 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.178 0.706
76 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.178 0.024
77 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.177 -0.585
78 248125_at AT5G54740 SESA5, seed storage albumin 5 0.177 0.110
79 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.795 -0.042
80 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -0.635 -0.092
81 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.499 0.016
82 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.446 -0.036
83 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.439 -0.158
84 265913_at AT2G25625 unknown -0.433 -0.154
85 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.390 -0.277
86 259871_at AT1G76800 [Vacuolar iron transporter (VIT) family protein] -0.349 -0.306
87 258362_at AT3G14280 unknown -0.331 -0.306
88 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.324 -0.127
89 264958_at AT1G76960 unknown -0.320 0.226
90 259766_at AT1G64360 unknown -0.317 -0.309
91 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.308 -0.185
92 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 -0.303 -0.130
93 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] -0.294 -0.034
94 256789_at AT3G13672 SINA2 -0.293 0.182
95 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.289 0.464
96 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.277 0.194
97 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.276 -0.015
98 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.266 -0.205
99 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.258 -0.115
100 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] -0.257 0.052
101 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.250 -0.053
102 255621_at AT4G01390 [TRAF-like family protein] -0.250 0.168
103 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.249 -0.229
104 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] -0.242 -0.164
105 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 -0.234 -0.081
106 267538_at AT2G41870 [Remorin family protein] -0.222 0.165
107 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.218 0.132
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.216 -0.285
109 265454_at AT2G46530 ARF11, auxin response factor 11 -0.214 0.033
110 246566_at AT5G14940 [Major facilitator superfamily protein] -0.214 0.004
111 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.211 0.237
112 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.207 0.113
113 247511_at AT5G62040 BFT, brother of FT and TFL1 -0.206 -0.246
114 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.203 -0.325
115 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.201 -0.036
116 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.201 -0.000
117 261221_at AT1G19960 unknown -0.199 0.073
118 255587_at AT4G01480 AtPPa5, pyrophosphorylase 5, PPa5, pyrophosphorylase 5 -0.198 0.100
119 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.197 -0.244
120 256469_at AT1G32540 LOL1, lsd one like 1 -0.195 -0.071
121 263002_at AT1G54200 unknown -0.192 -0.084
122 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.191 -0.273
123 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 -0.189 0.109
124 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.186 -0.060
125 267459_at AT2G33850 unknown -0.184 0.163
126 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.183 -0.035
127 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.177 0.045
128 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 -0.176 0.112
129 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.176 -0.451
130 259371_at AT1G69080 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.175 -0.343
131 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.175 -0.150
132 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] -0.174 -0.017
133 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 -0.174 -0.064
134 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.172 0.226
135 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.170 -0.120
136 251284_at AT3G61840 unknown -0.170 -0.180
137 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.168 0.111
138 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 -0.166 -0.248
139 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.166 0.487
140 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.162 0.096
141 260012_at AT1G67865 unknown -0.162 -0.363
142 262378_at AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 -0.160 -0.026
143 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.159 -0.117
144 262452_at AT1G11210 unknown -0.159 -0.081
145 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 -0.159 -0.042
146 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.158 -0.274
147 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.157 0.083
148 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.156 -0.198
149 266738_at AT2G47010 unknown -0.156 -0.079
150 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.154 -0.408
151 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] -0.152 0.029
152 251591_at AT3G57680 [Peptidase S41 family protein] -0.152 -0.058
153 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.151 -0.147
154 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.151 -0.468
155 253317_at AT4G33960 unknown -0.150 0.085
156 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.149 -0.257