4.0:Information of module
shoots WT 0uM Fe
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.585e-09
GO:0006811 ion transport BP 4.812e-08
GO:0006820 anion transport BP 7.994e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 1.739e-09
GO:0019752 carboxylic acid metabolic process BP 1.740e-09
GO:0006082 organic acid metabolic process BP 1.846e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoots WT 0uM Fe		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 1.012 -0.111
2 263402_at AT2G04050 [MATE efflux family protein] 0.858 0.003
3 257645_at AT3G25790 [myb-like transcription factor family protein] 0.649 -0.136
4 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.637 0.513
5 257421_at AT1G12030 unknown 0.572 -0.161
6 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.547 0.731
7 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.530 -0.843
8 249459_at AT5G39580 [Peroxidase superfamily protein] 0.478 0.560
9 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.473 0.228
10 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.451 0.813
11 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.441 -0.615
12 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.435 0.588
13 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.434 -0.399
14 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.426 -0.781
15 258349_at AT3G17609 HYH, HY5-homolog 0.416 0.004
16 264680_at AT1G65510 unknown 0.409 0.263
17 263515_at AT2G21640 unknown 0.407 0.586
18 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.406 0.907
19 256132_at AT1G13610 [alpha/beta-Hydrolases superfamily protein] 0.399 -0.387
20 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.394 -0.718
21 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.387 0.389
22 264809_at AT1G08830 CSD1, copper/zinc superoxide dismutase 1 0.370 1.375
23 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.354 -0.630
24 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.352 0.378
25 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.348 -1.152
26 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 0.341 -0.155
27 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.340 -1.025
28 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.333 0.002
29 262373_at AT1G73120 unknown 0.328 0.762
30 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.317 0.674
31 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.305 0.567
32 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.297 -0.631
33 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.296 1.323
34 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.296 -0.887
35 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.293 0.063
36 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.291 -0.177
37 252511_at AT3G46280 [protein kinase-related] 0.288 -0.066
38 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.284 -1.064
39 267472_at AT2G02850 ARPN, plantacyanin 0.281 1.294
40 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] 0.280 -0.032
41 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.274 -1.104
42 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.273 -0.841
43 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.266 0.187
44 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.261 0.238
45 256544_at AT1G42560 ATMLO9, ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, MLO9, MILDEW RESISTANCE LOCUS O 9 0.258 -1.229
46 248392_at AT5G52050 [MATE efflux family protein] 0.255 -0.055
47 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.255 0.035
48 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.254 -1.072
49 258209_at AT3G14060 unknown 0.254 -0.848
50 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.251 -0.848
51 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.250 -0.431
52 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.250 -0.399
53 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 0.239 -0.036
54 265600_at AT2G14230 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.237 -0.678
55 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 0.232 -0.355
56 264821_at AT1G03470 NET3A, Networked 3A 0.228 -0.215
57 245296_at AT4G16370 oligopeptide transporter 0.227 -0.172
58 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.223 0.151
59 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.221 -0.099
60 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.221 1.077
61 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.219 -0.782
62 264756_at AT1G61370 [S-locus lectin protein kinase family protein] 0.213 0.025
63 263133_at AT1G78450 [SOUL heme-binding family protein] 0.212 0.419
64 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.212 0.374
65 249174_at AT5G42900 COR27, cold regulated gene 27 0.212 -0.471
66 245507_at AT4G15710 unknown 0.201 -0.759
67 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.201 0.185
68 254817_at AT4G12460 ORP2B, OSBP(oxysterol binding protein)-related protein 2B 0.193 -0.998
69 257062_at AT3G18290 BTS, BRUTUS, EMB2454, embryo defective 2454 0.188 0.023
70 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.187 0.922
71 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.185 -0.209
72 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.181 -0.050
73 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.181 -0.369
74 251811_at AT3G54990 SMZ, SCHLAFMUTZE 0.180 -0.052
75 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.178 0.951
76 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.178 -0.001
77 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.177 -0.218
78 248125_at AT5G54740 SESA5, seed storage albumin 5 0.177 -0.006
79 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.795 0.168
80 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -0.635 -0.169
81 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.499 0.012
82 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.446 0.231
83 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.439 0.451
84 265913_at AT2G25625 unknown -0.433 -0.699
85 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.390 -0.282
86 259871_at AT1G76800 [Vacuolar iron transporter (VIT) family protein] -0.349 0.131
87 258362_at AT3G14280 unknown -0.331 -0.760
88 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.324 -1.197
89 264958_at AT1G76960 unknown -0.320 -0.727
90 259766_at AT1G64360 unknown -0.317 -1.025
91 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.308 -0.430
92 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 -0.303 -0.139
93 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] -0.294 -0.913
94 256789_at AT3G13672 SINA2 -0.293 0.164
95 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.289 -0.865
96 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.277 0.449
97 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.276 -0.479
98 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.266 -0.536
99 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.258 -0.881
100 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] -0.257 0.957
101 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.250 0.349
102 255621_at AT4G01390 [TRAF-like family protein] -0.250 0.168
103 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.249 -0.915
104 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] -0.242 0.424
105 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 -0.234 -0.876
106 267538_at AT2G41870 [Remorin family protein] -0.222 -0.311
107 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.218 -0.935
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.216 -0.503
109 265454_at AT2G46530 ARF11, auxin response factor 11 -0.214 -0.412
110 246566_at AT5G14940 [Major facilitator superfamily protein] -0.214 -0.776
111 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.211 -0.395
112 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.207 0.762
113 247511_at AT5G62040 BFT, brother of FT and TFL1 -0.206 -0.731
114 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.203 0.432
115 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.201 0.588
116 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.201 -0.382
117 261221_at AT1G19960 unknown -0.199 0.375
118 255587_at AT4G01480 AtPPa5, pyrophosphorylase 5, PPa5, pyrophosphorylase 5 -0.198 1.180
119 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.197 -0.555
120 256469_at AT1G32540 LOL1, lsd one like 1 -0.195 1.142
121 263002_at AT1G54200 unknown -0.192 -0.881
122 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.191 0.053
123 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 -0.189 -0.031
124 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.186 0.195
125 267459_at AT2G33850 unknown -0.184 -1.190
126 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.183 -0.694
127 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.177 0.099
128 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 -0.176 -0.232
129 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.176 -0.335
130 259371_at AT1G69080 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.175 -0.786
131 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.175 0.031
132 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] -0.174 0.222
133 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 -0.174 0.153
134 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.172 0.253
135 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.170 0.212
136 251284_at AT3G61840 unknown -0.170 -0.891
137 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.168 -0.298
138 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 -0.166 -0.383
139 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.166 -0.310
140 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.162 0.753
141 260012_at AT1G67865 unknown -0.162 -1.064
142 262378_at AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 -0.160 -0.257
143 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.159 -0.220
144 262452_at AT1G11210 unknown -0.159 0.413
145 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 -0.159 0.707
146 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.158 0.601
147 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.157 0.811
148 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.156 -0.036
149 266738_at AT2G47010 unknown -0.156 0.591
150 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.154 -0.299
151 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] -0.152 0.421
152 251591_at AT3G57680 [Peptidase S41 family protein] -0.152 0.527
153 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.151 0.184
154 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.151 -0.982
155 253317_at AT4G33960 unknown -0.150 -0.138
156 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.149 0.195