4.0:Information of module
shoots WT 0uM Fe
In comparison with COL-0-Fe--shoot help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.585e-09
GO:0006811 ion transport BP 4.812e-08
GO:0006820 anion transport BP 7.994e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 1.739e-09
GO:0019752 carboxylic acid metabolic process BP 1.740e-09
GO:0006082 organic acid metabolic process BP 1.846e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
shoots WT 0uM Fe		 Log2 signal ratio
COL-0-Fe--shoot
1 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 1.012 1.400
2 263402_at AT2G04050 [MATE efflux family protein] 0.858 1.080
3 257645_at AT3G25790 [myb-like transcription factor family protein] 0.649 0.004
4 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.637 1.185
5 257421_at AT1G12030 unknown 0.572 1.144
6 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 0.547 0.083
7 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.530 -0.174
8 249459_at AT5G39580 [Peroxidase superfamily protein] 0.478 -0.244
9 257481_at AT1G08430 ALMT1, aluminum-activated malate transporter 1, ATALMT1, ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1 0.473 0.022
10 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.451 -0.228
11 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.441 0.136
12 259511_at AT1G12520 ATCCS, copper chaperone for SOD1, CCS, copper chaperone for SOD1 0.435 0.108
13 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.434 0.218
14 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.426 0.004
15 258349_at AT3G17609 HYH, HY5-homolog 0.416 0.305
16 264680_at AT1G65510 unknown 0.409 0.049
17 263515_at AT2G21640 unknown 0.407 0.806
18 246913_at AT5G25830 GATA12, GATA transcription factor 12 0.406 0.758
19 256132_at AT1G13610 [alpha/beta-Hydrolases superfamily protein] 0.399 0.249
20 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.394 -0.063
21 248528_at AT5G50760 SAUR55, SMALL AUXIN UPREGULATED RNA 55 0.387 -0.058
22 264809_at AT1G08830 CSD1, copper/zinc superoxide dismutase 1 0.370 0.108
23 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.354 0.113
24 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.352 0.562
25 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.348 0.067
26 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 0.341 0.238
27 245506_at AT4G15700 [Thioredoxin superfamily protein] 0.340 -0.287
28 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.333 0.239
29 262373_at AT1G73120 unknown 0.328 0.500
30 254447_at AT4G20860 [FAD-binding Berberine family protein] 0.317 -0.031
31 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.305 0.326
32 255177_at AT4G08040 ACS11, 1-aminocyclopropane-1-carboxylate synthase 11 0.297 0.119
33 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 0.296 0.174
34 261619_x_at AT1G33130 [CACTA-like transposase family (Ptta/En/Spm), has a 1.3e-125 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.296 0.613
35 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.293 0.112
36 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.291 -0.101
37 252511_at AT3G46280 [protein kinase-related] 0.288 0.275
38 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.284 -0.319
39 267472_at AT2G02850 ARPN, plantacyanin 0.281 -0.024
40 265099_at AT1G03990 [Long-chain fatty alcohol dehydrogenase family protein] 0.280 0.270
41 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.274 0.105
42 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.273 0.015
43 245349_at AT4G16690 ATMES16, ARABIDOPSIS THALIANA METHYL ESTERASE 16, MES16, methyl esterase 16 0.266 -0.104
44 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.261 0.790
45 256544_at AT1G42560 ATMLO9, ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, MLO9, MILDEW RESISTANCE LOCUS O 9 0.258 -0.055
46 248392_at AT5G52050 [MATE efflux family protein] 0.255 0.139
47 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 0.255 0.398
48 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.254 -0.006
49 258209_at AT3G14060 unknown 0.254 0.455
50 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.251 -0.129
51 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] 0.250 0.067
52 254743_at AT4G13420 ATHAK5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, HAK5, high affinity K+ transporter 5 0.250 0.003
53 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 0.239 0.052
54 265600_at AT2G14230 [CACTA-like transposase family (Ptta/En/Spm), has a 2.0e-119 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.237 0.580
55 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 0.232 -0.053
56 264821_at AT1G03470 NET3A, Networked 3A 0.228 0.421
57 245296_at AT4G16370 oligopeptide transporter 0.227 0.514
58 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.223 0.203
59 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.221 0.085
60 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.221 0.146
61 259433_at AT1G01570 [FUNCTIONS IN: transferase activity, transferring glycosyl groups] 0.219 0.426
62 264756_at AT1G61370 [S-locus lectin protein kinase family protein] 0.213 0.078
63 263133_at AT1G78450 [SOUL heme-binding family protein] 0.212 -0.234
64 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.212 0.586
65 249174_at AT5G42900 COR27, cold regulated gene 27 0.212 -0.374
66 245507_at AT4G15710 unknown 0.201 -0.024
67 249775_at AT5G24160 SQE6, squalene monoxygenase 6 0.201 0.082
68 254817_at AT4G12460 ORP2B, OSBP(oxysterol binding protein)-related protein 2B 0.193 -0.033
69 257062_at AT3G18290 BTS, BRUTUS, EMB2454, embryo defective 2454 0.188 0.499
70 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 0.187 -0.162
71 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.185 0.064
72 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.181 -0.148
73 247848_at AT5G58120 [Disease resistance protein (TIR-NBS-LRR class) family] 0.181 0.062
74 251811_at AT3G54990 SMZ, SCHLAFMUTZE 0.180 0.069
75 247327_at AT5G64120 AtPRX71, PRX71, peroxidase 71 0.178 0.027
76 247001_at AT5G67330 ATNRAMP4, ARABIDOPSIS THALIANA NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 4, NRAMP4, natural resistance associated macrophage protein 4 0.178 0.441
77 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.177 -0.180
78 248125_at AT5G54740 SESA5, seed storage albumin 5 0.177 0.455
79 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.795 0.359
80 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 -0.635 -0.289
81 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.499 0.161
82 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.446 0.164
83 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.439 -0.919
84 265913_at AT2G25625 unknown -0.433 0.001
85 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 -0.390 0.045
86 259871_at AT1G76800 [Vacuolar iron transporter (VIT) family protein] -0.349 -0.498
87 258362_at AT3G14280 unknown -0.331 0.022
88 254716_at AT4G13560 UNE15, unfertilized embryo sac 15 -0.324 -0.219
89 264958_at AT1G76960 unknown -0.320 0.145
90 259766_at AT1G64360 unknown -0.317 -0.196
91 264573_at AT1G05310 [Pectin lyase-like superfamily protein] -0.308 -0.107
92 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 -0.303 0.161
93 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] -0.294 -0.030
94 256789_at AT3G13672 SINA2 -0.293 -0.022
95 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.289 -0.079
96 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.277 -0.276
97 264346_at AT1G12010 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.276 -0.150
98 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 -0.266 0.192
99 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.258 -0.109
100 262277_at AT1G68650 [Uncharacterized protein family (UPF0016)] -0.257 -0.598
101 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.250 -0.074
102 255621_at AT4G01390 [TRAF-like family protein] -0.250 0.008
103 255575_at AT4G01430 UMAMIT29, Usually multiple acids move in and out Transporters 29 -0.249 -0.314
104 261448_at AT1G21140 [Vacuolar iron transporter (VIT) family protein] -0.242 -0.253
105 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 -0.234 0.073
106 267538_at AT2G41870 [Remorin family protein] -0.222 -0.135
107 252520_at AT3G46370 [Leucine-rich repeat protein kinase family protein] -0.218 -0.214
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.216 0.172
109 265454_at AT2G46530 ARF11, auxin response factor 11 -0.214 -0.089
110 246566_at AT5G14940 [Major facilitator superfamily protein] -0.214 -0.186
111 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 -0.211 -0.032
112 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.207 -0.076
113 247511_at AT5G62040 BFT, brother of FT and TFL1 -0.206 0.073
114 259723_at AT1G60960 ATIRT3, IRON REGULATED TRANSPORTER 3, IRT3, iron regulated transporter 3 -0.203 0.020
115 251109_at AT5G01600 ATFER1, ARABIDOPSIS THALIANA FERRETIN 1, FER1, ferretin 1 -0.201 -0.870
116 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.201 -0.048
117 261221_at AT1G19960 unknown -0.199 0.195
118 255587_at AT4G01480 AtPPa5, pyrophosphorylase 5, PPa5, pyrophosphorylase 5 -0.198 0.117
119 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.197 -0.268
120 256469_at AT1G32540 LOL1, lsd one like 1 -0.195 -0.701
121 263002_at AT1G54200 unknown -0.192 0.031
122 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.191 0.072
123 258962_at AT3G10570 CYP77A6, cytochrome P450, family 77, subfamily A, polypeptide 6 -0.189 -0.009
124 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 -0.186 0.090
125 267459_at AT2G33850 unknown -0.184 -0.050
126 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.183 -0.070
127 254174_at AT4G24120 ATYSL1, YELLOW STRIPE LIKE 1, YSL1, YELLOW STRIPE like 1 -0.177 -0.496
128 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 -0.176 0.156
129 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 -0.176 -0.030
130 259371_at AT1G69080 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.175 -0.035
131 253331_at AT4G33490 [Eukaryotic aspartyl protease family protein] -0.175 -0.261
132 267503_at AT2G45600 [alpha/beta-Hydrolases superfamily protein] -0.174 -0.175
133 259516_at AT1G20450 ERD10, EARLY RESPONSIVE TO DEHYDRATION 10, LTI29, LOW TEMPERATURE INDUCED 29, LTI45, LOW TEMPERATURE INDUCED 45 -0.174 -0.286
134 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.172 0.406
135 264100_at AT1G78970 ATLUP1, ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, LUP1, lupeol synthase 1 -0.170 -0.042
136 251284_at AT3G61840 unknown -0.170 0.105
137 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.168 0.102
138 263715_at AT2G20570 GBF's pro-rich region-interacting factor 1 -0.166 -0.019
139 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] -0.166 -0.007
140 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.162 -0.187
141 260012_at AT1G67865 unknown -0.162 0.030
142 262378_at AT1G72830 ATHAP2C, HAP2C, NF-YA3, nuclear factor Y, subunit A3 -0.160 -0.090
143 256509_at AT1G75300 [NmrA-like negative transcriptional regulator family protein] -0.159 -0.011
144 262452_at AT1G11210 unknown -0.159 -0.139
145 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 -0.159 -0.070
146 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.158 -0.374
147 257701_at AT3G12710 [DNA glycosylase superfamily protein] -0.157 -0.061
148 266873_at AT2G44740 CYCP4;1, cyclin p4;1 -0.156 0.022
149 266738_at AT2G47010 unknown -0.156 0.192
150 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 -0.154 0.012
151 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] -0.152 -0.393
152 251591_at AT3G57680 [Peptidase S41 family protein] -0.152 0.018
153 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 -0.151 -0.166
154 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.151 -0.055
155 253317_at AT4G33960 unknown -0.150 -0.078
156 263480_at AT2G04032 ZIP7, zinc transporter 7 precursor -0.149 0.041